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There is a hardcoded limit of 20 filenames (BLOCK_FILES_FROM_STDIN)
in ir/waisindex.c which is not even checked for overruns (shudder).
Either increase that value or use the patch01 for freeWAIS-sf-1.1
wich allows for an arbitrary number of filenames:
ftp://ls6-www.informatik.uni-dortmund.de/pub/wais/freeWAIS-sf-1.1/
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Last Update May 13 2007 @ 00:24 AM