Patent application title: MUTANT CYAA POLYPEPTIDES AND POLYPEPTIDE DERIVATIVES SUITABLE FOR THE DELIVERY OF IMMUNOGENIC MOLECULES INTO A CELL
Inventors:
Peter Sebo (Prague, CZ)
Adriana Osickova (Prague, CZ)
Jiri Masin (Uvaly, CZ)
Catherine Fayolle (Epinay Sur Orge, FR)
Jan Krusek (Prague, CZ)
Marek Basler (Prague, CZ)
Claude Leclerc (Paris, FR)
Claude Leclerc (Paris, FR)
Radim Osicka (Praha, CZ)
IPC8 Class: AC12N988FI
USPC Class:
435232
Class name: Chemistry: molecular biology and microbiology enzyme (e.g., ligases (6. ), etc.), proenzyme; compositions thereof; process for preparing, activating, inhibiting, separating, or purifying enzymes lyase (4. )
Publication date: 2016-03-24
Patent application number: 20160083714
Abstract:
The invention relates to mutant CyaA/E570Q+K860 polypeptides suitable for
use as proteinaceous vectors for delivering one or more molecules of
interest into a cell, in particular into a cell expressing the CD11b
receptor. The invention further relates to polypeptide derivatives
suitable for eliciting an immune response in a host. The invention is
more particularly directed to polypeptides derived from an adenylate
cyclase protein (CyaA) either under the form of a toxin or of a toxoid,
which are mutant polypeptides. Said mutant polypeptides are capable of
retaining the binding activity of native CyaA to a target cell and
preferably of also retaining the translocating activity of native CyaA
through its N-terminal domain into target cells and furthermore have a
pore-forming activity which is reduced or suppressed as compared to that
of the native CyaA toxin.Claims:
1-20. (canceled)
21. A method for preparing a polypeptide mutant of the Bordetella pertussis CyaA protein comprising: a) substituting the glutamic acid residue at position 570 of SEQ ID NO: 1 with another amino acid residue selected from the group consisting of Gln, Asn, Met, Thr, Ser, Gly, Arg, Lys, Val, Leu, Cys, Ile, and Asp; and b) substituting the lysine residue at position 860 of SEQ ID NO: 1 with another amino acid residue selected from the group consisting of Gln, Asn, Met, Thr, Ser, Gly, Arg, Val, Leu, Cys, and Ile, to generate the polypeptide mutant of the Bordetella pertussis CyaA protein.
22. The method of claim 21, wherein the polypeptide mutant of the Bordetella pertussis CyaA protein is combined with one or more molecules of interest for eliciting an immune response comprising an amino acid sequence of a poliovirus antigen, an HIV virus antigen, an influenza virus antigen, a choriomeningitis virus antigen, a tumor antigen, or comprising or consisting of an amino acid sequence of any of these antigens which comprises at least one epitope.
23. The method of claim 22, wherein the molecule of interest for eliciting an immune response is inserted into a permissive site of the polypeptide mutant of the Bordetella pertussis CyaA protein, thereby preserving the capacity of said polypeptide to translocate its N-terminal adenylate cyclase enzyme domain into target cells.
24. The method of claim 22, wherein each of said amino acid sequences for eliciting an immune response is covalently or non-covalently coupled to an amino acid residue of said polypeptide mutant of the Bordetella pertussis CyaA protein.
25. The method of claim 21, wherein the adenylate cyclase activity of the polypeptide mutant of the Bordetella pertussis CyaA protein in cells is partly or totally suppressed as compared to that of the Bordetella pertussis CyaA toxin.
26. The method of claim 25, wherein the polypeptide mutant of the Bordetella pertussis CyaA protein has essentially lost its adenylate cyclase enzyme activity.
27. The method of claim 25, wherein said partial or total suppression of adenylate cyclase activity is achieved by insertion of a dipeptide between the amino acid residues at positions 188 and 189 of SEQ ID NO: 1.
28. The method of claim 21, further comprising truncating the polypeptide mutant of the Bordetella pertussis CyaA protein at the N- or C-terminus.
29. The method of claim 21, further comprising deleting internal residues of the polypeptide mutant of the Bordetella pertussis CyaA protein.
30. The method of claim 21, further comprising inserting an LQ or GS dipeptide between the amino acid residues at positions 188 and 189 of SEQ ID NO: 1.
31. The method of claim 21, comprising: a) substituting the glutamic acid residue at position 570 of SEQ ID NO: 1 with a Gln amino acid residue; and b) substituting the lysine residue at position 860 of SEQ ID NO: 1 with an Arg amino acid residue, to generate the polypeptide mutant of the Bordetella pertussis CyaA protein.
Description:
[0001] The invention relates to polypeptides suitable for use in the
delivery of one or more molecules into a cell.
[0002] In particular, the invention relates to polypeptides suitable for use in the delivery of one or more molecules which are able to elicite an immune response into a host, especially by targeting cells which express the CD11b/CD18 receptor (also referred to herein as "CD11b expressing cells").
[0003] The invention is more particularly directed to polypeptides derived from an adenylate cyclase protein (CyaA), the latter being used either under the form of a toxin or of a detoxified protein or toxoid, which are mutant polypeptides. Said mutant polypeptides are capable of retaining the binding activity of native CyaA to a target cell and preferably of also retaining the translocating activity of native CyaA through its N-terminal domain into target cells and furthermore have a pore-form ing activity which is reduced or suppressed as compared to that of the native CyaA toxin.
[0004] The invention relates in particular to the use of said polypeptides as proteinaceous vectors. Accordingly the mutant polypeptides are further combined with non-CyaA molecules, thereby giving rise to polypeptide derivatives, wherein said molecules have a preventive vaccinal and/or therapeutic interest when administered to a host.
[0005] The polypeptides according to the invention are suitable for use as proteinaceous vectors for the delivery of a molecule, in particular of a polypeptidic molecule having an amino acid sequence comprising one or more epitope(s), especially antigens, into a cell, in particular in CD11b expressing cells.
[0006] The invention thus also relates to a polypeptide derivative (a derivative of the mutant polypeptide of the invention) which comprises or consists of a mutant polypeptide according to the invention recombined to one or more molecules, in particular to one or more molecules suitable for eliciting an immune response, thus constituting a recombinant polypeptide or a fusion polypeptide. The invention also relates to polypeptide derivatives obtained by chemically grafting said molecule(s) to the mutant polypeptides.
[0007] According to an embodiment, the polypeptide derivatives according to the invention are suitable for use in prophylactic treatment and especially in vaccination and in therapy including in immunotherapy, in particular for eliciting an immune response in a subject.
[0008] The native CyaA used in the context of the present invention for the design of the polypeptides of the invention is the adenylate cyclase produced primarily in Bordetella organisms, especially in Bordetella Pertussis and which has the following features and properties disclosed for the purpose of characterising said protein in the context of the invention.
[0009] The bi-functional RTX adenylate cyclase toxin-hemolysin (also designated herewith as the adenylate cyclase toxin (CyaA, ACT, or AC-Hly) is a key virulence factor of Bordetella pertussis which is the causative agent of whooping cough (1). Its 1706 residues-long polypeptide is a fusion of an N-terminal adenylate cyclase (AC) enzyme domain or part (˜400 residues) to a pore-forming RTX hemolysin (Repeat in ToXin cytolysin) of ˜1306 residues constituting the C-terminal part or domain (2). The latter harbors the sites of activation of proCyaA to CyaA by covalent post-translational palmitoylation of ε-amino groups of Lys860 and Lys983, as well as the numerous RTX repeats forming ˜40 calcium binding sites, the loading of which is required for cytotoxic activity of CyaA (3, 4). The CyaA protein is indeed synthesized as an inactive protoxin which is converted into an active toxin by post translational palmitoylation of two internal lysine residues (lysines 860 and 983). This post translational modification requires the expression with the cyaA gene, of an accessory gene i.e., cyaC which is located nearby cyaA on B. pertussis chromosome.
[0010] The toxin primarily targets host myeloid phagocytes expressing the αMβ2 integrin receptor, known also as CD11b/CD18, CR3 or Mac-1 (5). Said toxin especially binds to the CD11b/CD18 receptor of cells expressing the same through a receptor binding site present in its C-terminal part. These cells are accordingly target cells for the native toxin and also for the polypeptides of the invention. CyaA inserts into cytoplasmic membrane of cells and translocates the AC enzyme domain into the cytosol of said target cells (6, 7). Inside cells, the AC is activated by calmodulin and catalyzes uncontrolled conversion of cellular ATP to cAMP, a key second messenger molecule provoking impairment of bactericidal functions of phagocytes (1). At high doses (>100 ng/ml), CyaA-catalyzed dissipation of ATP into cAMP becomes cytotoxic and promotes apoptosis or even rapid necrotic death and lysis of CD11b+ monocytes (8, 9).
[0011] Recently, the inventors showed that CyaA binds N-linked oligosaccharides of its CD11b/CD18 receptor (10). This suggests that low specificity interactions with glycans of ubiquitous cell surface proteins or glycolipids may account for the about two order of magnitude reduced but readily detectable capacity of CyaA to penetrate also cells lacking CD11b/CD18. Indeed, due to the extremely high specific catalytic activity of the AC domain, CyaA was found to substantially elevate cAMP also in mammalian and avian erythrocytes, lymphocytes, lymphoma, neuroblastoma, CHO, or tracheal epithelial cells (1, 11).
[0012] It has already been proposed in the prior art to provide detoxified toxin also called toxoid, wherein the adenylate cyclase activity is decreased, especially essentially suppressed. Such CyaA/AC- toxoid may be used to achieve the preparation of the polypeptides of the invention.
[0013] Besides elevating cAMP, the toxin exhibits also a moderate hemolytic activity on mammalian and avian erythrocytes. This is due to the capacity to form small cation-selective pores of an estimated diameter of 0.6 to 0.8 nm, which permeabilize cellular membrane and eventually provoke colloid-osmotic cell lysis (12). Recently, the inventors and others have shown that the pore-forming activity of CyaA synergizes with its cell-invasive AC enzyme activity and contributes to the overall cytolytic potency of CyaA on CD11b+ cells (13, 14). Due to an intact pore-forming (hemolytic) capacity, in the absence of osmoprotectants such as serum, the enzymatically inactive CyaNACtoxoid (15) still exhibits a full hemolytic activity on erythrocytes and a residual, about ten-fold reduced cytolytic activity on CD11b-expressing monocytes (8), which sets a limit to its use in therapy.
[0014] The hemolytic (pore-forming) and AC membrane translocation (cell-invasive) activities of CyaA were early on found to be dissociable by low calcium concentration, low temperature (16) and by the extent and nature of acylation of CyaA (4, 12, 17). Moreover, the two activities differ substantially in sensitivity to charge-reversing or neutral substitutions of glutamates at positions 509, 516, 570 and 581 within the hydrophobic domain (8, 13, 18). The cell-invasive and pore-forming activities of CyaA were thus proposed to be mutually independent and operating in parallel in target cell membrane. The model illustrated in FIG. 5A, suggests that two distinct CyaA conformers insert into target cell membrane in parallel, one being the translocation precursor, accounting for delivery of the AC domain across cellular membrane with concomitant influx of calcium ions into cells, the other being a pore precursor eventually forming oligomeric pores (13, 18, 19).
[0015] The inventors have now tested this model and refined it, showing that the pore-forming activity is not involved in translocation of the AC domain across target cell.
[0016] In the present invention, the inventors initially designed CyaA mutant polypeptides, based especially on the adenylate cyclase of Bordetella pertussis, either in the toxin or in the toxoid format, having a combination of substitutions within the pore-forming (E570Q) and acylation-bearing (K860R) domains and showed that this specific combination of substitutions selectively abolished the cell-permeabilizing activity of CyaA, thus eliminating the residual cytolytic activity of CyaA/AC- toxoids on CD11b+ cells. At the same time, the E570Q+K860R construct retained a full capacity to translocate the AC domain into cytosol of cells to elevate cellular cAMP and its toxoid was fully capable to deliver epitopes containing molecules inserted within said construct to the cytosolic pathway of dendritic cells for MHC class I-restricted presentation and induction of specific cytotoxic T cell responses in vivo.
[0017] The CyaA/233OVA/E570Q+K860R mutant designed by the inventors, and in which an OVA antigenic peptide is inserted as described in the examples, is the first construct illustrative of the capacity of the CyaA mutant to provide an importantly reduced capacity to permeabilize cells while remaining fully capable of translocating the AC domain across cellular membrane.
[0018] The inventors have now designed particular constructs, illustrated especially as a CyaA/E570Q+K860R/AC- toxoid and have shown that despite its much reduced cell-permeabilizing (cytolytic) activity, it remains fully active in antigen delivery into CD11b+ APCs. The inventors have further shown that the overall cytolytic activity of the illustrative CyaA/E570Q+K860R/AC- toxoid is very low. It is thus devoid of residual toxicity in an animal or human host and is therefore highly suitable for use in therapy.
[0019] The invention thus provides new polypeptides, which are toxoids and have an enhanced safety profile and can be used as proteinaceous vectors for the delivery of molecules of interest, in particular of immunogenic peptidic sequences, to cells of a patient in need of a treatment, and more particularly to cells expressing CD11b.
[0020] Based on the experiments carried out by the inventors it has thus been possible to define and provide a polypeptide which is a mutant of an adenylate cyclase protein (mutant polypeptide) and whose amino acid sequence comprises or consists of one of the following sequences:
[0021] a) the amino acid sequence of the adenylate cyclase (CyaA) of Bordetella pertussis, Bordetella parapertussis or Bordetella hinzii wherein the following mutations have been performed:
[0022] (i) the substitution of the glutamic acid residue at position 570 by a glutamine residue (E570Q) or by a conservative amino acid residue, and
[0023] (ii) the substitution of the lysine residue at position 860 by an arginine residue (K860R) or by a conservative amino acid residue, or;
[0024] b) an amino acid sequence of a fragment of the adenylate cyclase of Bordetella pertussis, Bordetella parapertussis or Bordetella hinzii, which fragment has the capacity of the CyaA protein of Bordetella pertussis to bind to a target cell and the capacity to translocate its N-terminal adenylate cyclase enzyme domain or part thereof into said cell, wherein said fragment further contains the following mutated amino acid residues located at positions 570 and 860 in said adenylate cyclase: E570Q and K860R, or
[0025] c) an amino acid sequence which differs from the amino acid sequence as defined in a) or b) by one or more amino acid residue substitutions and/or insertions and which has the capacity of the CyaA protein of Bordetella Pertussis to bind to a target cell and the capacity to translocate its N-terminal adenylate cyclase enzyme domain or part thereof into said cell, wherein said amino acid sequence further contains the following mutated amino acid residues located at positions 570 and 860 in said adenylate cyclase: E570Q and K860R, or
[0026] d) the amino acid sequence of the adenylate cyclase (CyaA) of Bordetella bronchiseptica wherein the following mutations have been performed:
[0027] (i) the substitution of the glutamic acid residue at position 569 by a glutamine residue (E569Q) or by a conservative amino acid residue, and
[0028] (ii) the substitution of the lysine residue at position 859 by an arginine residue (K859R) or by a conservative amino acid residue, or;
[0029] e) an amino acid sequence of a fragment of the adenylate cyclase of Bordetella bronchiseptica, which fragment has the capacity of the CyaA protein of Bordetella pertussis to bind to a target cell and the capacity to translocate its N-terminal adenylate cyclase enzyme domain or part thereof into said cell, wherein said fragment further contains the following mutated amino acid residues located at positions 569 and 859 in said adenylate cyclase: E569Q and K859R, or
[0030] f) an amino acid sequence which differs from the amino acid sequence as defined in d) or e) by one or more amino acid residue substitutions and/or insertions and which has the capacity of the CyaA protein of Bordetella Pertussis to bind to a target cell and the capacity to translocate its N-terminal adenylate cyclase enzyme domain or part thereof into said cell, wherein said amino acid sequence further contains the following mutated amino acid residues located at positions 569 and 859 in said adenylate cyclase: E569Q and K859R.
[0031] For the purpose of the invention, the N-terminal domain of the described fragment is the amino acid sequence of the fragment which includes the contiguous amino acid residues of the N-terminal part of the native CyaA protein, e.g. the N-terminal part of the fragment is all or part of the contiguous residues forming the sequence of 400 amino acid residues of the N-terminal domain of the Bordetella pertussis CyaA protein.
[0032] Herein, "E570Q" encompasses substitution of the glutamic acid residue at position 570 of native CyaA of Bordetella pertussis, Bordetella parapertussis or Bordetella hinzii by a glutamine residue or by another conservative residue, in particular a residue whose side chain size and hydrophilic nature is close to that of glutamic acid. The glutamic acid residue at position 570 is preferably substituted by an amino acid residue selected from Gln, Asn, Met, Thr, Ser, Gly, Arg, Lys, Val, Leu, Cys, Ile, Asp.
[0033] Herein, "K860R" encompasses substitution of the lysine residue at position 860 of native CyaA of Bordetella pertussis, Bordetella parapertussis or Bordetella hinzii by an arginine residue or by another conservative residue, in particular a residue whose side chain size and hydrophilic nature is close to that of lysine. The lysine residue at position 860 is preferably substituted by an amino acid residue selected from Arg, Asn, Gln, Met, Thr, Ser, Gly, Val, Leu, Cys, Ile.
[0034] Herein, "E569Q" encompasses substitution of the glutamic acid residue at position 569 of native CyaA of Bordetella bronchiseptica by a glutamine residue or by another conservative residue, in particular a residue whose side chain size and hydrophilic nature is close to that of glutamic acid. The glutamic acid residue at position 569 is preferably substituted by an amino acid residue selected from Gln, Asn, Met, Thr, Ser, Gly, Arg, Lys, Val, Leu, Cys, Ile, Asp.
[0035] Herein, "K859R" encompasses substitution of the lysine residue at position 859 of native CyaA of Bordetella bronchiseptica by an arginine residue or by another conservative residue, in particular a residue whose side chain size and hydrophilic nature is close to that of lysine. The lysine residue at position 859 is preferably substituted by an amino acid residue selected from Arg, Asn, Gln, Met, Thr, Ser, Gly, Val, Leu, Cys, Ile.
[0036] In the embodiments described hereafter, the mutant Bordetella pertussis CyaA proteins or protein fragments carrying the "E570Q" and "K860R" substitutions may be replaced by mutant Bordetella parapertussis or Bordetella hinzii CyaA proteins or protein fragments carrying the equivalent "E570Q" and "K860R" substitutions, or by mutant Bordetella bronchiseptica CyaA proteins or protein fragment carrying the equivalent "E569Q" and "K859R" substitutions.
[0037] The native CyaA of Bordetella pertussis has also been described as an amino acid sequence and a nucleotide sequence by Glaser, P. et al, 1988, Molecular Microbiology 2(1), 19-30. This sequence is referred to as SEQ ID No 1 as illustrated in FIG. 6. Accordingly, when amino acid residues or sequences or nucleotides or nucleotide sequences of the CyaA protein of B. pertussis, are cited in the present invention their positions are given with respect to the sequences disclosed in said publication of Glaser et al. 1988.
[0038] In an embodiment of the present invention the amino sequence of the Bordetella pertussis adenylate cyclase is the sequence disclosed as SEQ ID No 1.
[0039] When reference is made to SEQ ID No 1 or to SEQ ID No 2 herein, it is especially pointed out that, unless it is technically not relevant, the disclosed features would similarly apply to a sequence modified by insertion of residues in SEQ ID No 1 or SEQ ID No 2 in order to detoxify the CyaA protein. In such a case, the numbering of the amino acid residues should be adapted (especially insofar as positions 570 and 860 of the native sequence are concerned).
[0040] Advantageously, the CyaA protein or a fragment thereof is a protein or a fragment thereof, which is the result of the co-expression in a cell, especially in a recombinant cell, of both cyaA and cyaC genes. It has been indeed shown that in order to have invasive properties for target cells, CyaA has to undergo post-translational modifications which are enabled by the expression of both cyaA and cyaC genes (WO 93/21324).
[0041] In a particular embodiment of the invention, the CyaA protein is a bacterial protein. In a preferred embodiment, CyaA protein is derived from a Bordetella species.
[0042] Among Bordetella species of interest, according to the invention, one of them is Bordetella pertussis. Other Bordetella strains of interest are those of Bordetella parapertussis, Bordetella hinzii or Bordetella bronchiseptica. The sequence of CyaA protein of B. parapertussis has been disclosed especially under accession number NC 002928.3 (as a sequence of 1740 amino acids) and in Parkhill J. et al (Nat. Genet. DOI, 10 (2003)), for B. hinzii in Donato G. M. et al. (J. Bacteriol. 2005 November, 187(22):7579-88) and for B. bronchiseptica in Betsou F. et al (Gene 1995, Aug. 30; 162(1): 165-6). The sequence of Bordetella parapertussis has been disclosed especially under accession number CAB76450, referred to herein as SEQ ID No 7 as illustrated in FIG. 14. The sequence of Bordetella hinzii has been disclosed especially under accession number AAY57201, referred to herein as SEQ ID No 8 as illustrated in FIG. 15. The sequence of Bordetella bronchiseptica has been disclosed especially under accession number CAA85481, referred to herein as SEQ ID No 9 as illustrated in FIG. 16. Accordingly, when amino acid residues or sequences of the CyaA protein of Bordetella parapertussis, Bordetella hinzii or Bordetella bronchiseptica, are cited in the present invention their positions are given with respect to the sequences disclosed in SEQ ID No 7, 8 and 9 respectively.
[0043] The expression "polypeptide mutant of the adenylate cyclase protein" excludes the native adenylate cyclase as expressed by Bordetella. As stated above, it is characterised by a primary difference with the native protein, lying in the combined substitution of two specific amino acid residues. It may be further modified with respect to said native protein and it may especially be a fragment of the thus mutated protein, such as for example a truncated variant of said mutated protein, wherein residues at either or both terminal ends are deleted. In particular residues at the C-terminal end may be deleted to the extent that it does not affect the recognition and binding site for the CD11b/CD18 cell receptor. Alternatively or in addition residues may be deleted at the N-terminal end provided that it does not affect the translocation ability of the obtained mutant polypeptide. It may also be a fragment obtained after internal deletions of one or more residues of the native mutated CyaA protein.
[0044] Where the invention relates to a polypeptide mutant which is a fragment as stated herein, said fragment which necessarily comprises the mutated residues E570Q and K860R (when reference is made to the amino sequence of the CyaA protein of Bordetella pertussis) also retains the ability of the mutated full-length CyaA to bind cells and to translocate its N-terminal domain into the cytosol of target cells, especially of CD11b/CD18 expressing cells.
[0045] The invention provides thus mutant polypeptides suitable for use in the design of means for the delivery of one or more molecules into a cell, especially a target cell expressing the CD11b/CD18 receptor.
[0046] In particular the invention provides mutant polypeptides of a CyaA protein, where said protein is either derived from the CyaA toxin or is preferably derived from a toxoid thereof, especially a CyaA/ACtoxoid. The mutant polypeptides are capable of binding to a cell, especially to a target cell, especially a target cell expressing the CD11b/CD18 receptor, are capable of translocating their N-terminal domain or the molecule inserted in said domain or grafted on it into the cell and their pore-forming activity is totally or partially suppressed as compared to that of the CyaA toxin or toxoid.
[0047] The capacity of the mutant polypeptide to target CD11b/CD18 cells can be assayed especially according to the methods disclosed in EP 03291486.3 and El-Azami-El-Idrissi M. et al, J. Biol. Chem., 278(40)38514-21 or in WO 02/22169. Furthermore, the capacity of the mutant polypeptide to translocate the epitope(s) or polypeptide(s) containing said epitope(s) into the cytosol of target cell can be assayed by applying the method described in WO 02/22169.
[0048] Total or partial suppression of the CyaA toxin or toxoid pore-forming activity, or cell-permeabilizing capacity, is to be understood as the total or partial suppression of the ability to form pores, in particular cation selective pores of an estimated diameter of 0.6 to 0.8 nm, which permeabilize a cellular membrane and eventually provoke colloid-osmotic cell lysis. The pore-forming activity can be measured using the single whole cell patch-clamp experiment as described in examples.
[0049] The pore-forming activity of the CyaA toxin contributes to its overall cytolytic or haemolytic activity on cells. Indeed in the context of the present invention, the overall cytolytic or haemolytic activity of CyaA (or its "overall cytotoxic activity") is to be understood as the resultant of at least the adenylate cyclase and pore-forming activities of the CyaA toxin. Thus total or partial suppression of the CyaA toxin pore-forming activity allows at least a partial suppression of its cytolytic activity.
[0050] In a preferred embodiment, the overall cytolytic activity of the polypeptide according to the invention, in particular on cells which express the CD11b/CD18 receptor, is totally or partially reduced as compared to that of the Bordetella pertussis CyaA toxin. The cytolytic activity of the inventive polypeptide can be determined by measuring the amount of hemoglobulin (for erythrocytes) or of lactate dehydrogenase (for monocytes) released by the cells when incubated with the tested polypeptide as described in examples.
[0051] In a preferred embodiment, the overall cytolytic activity of the polypeptide according to the invention on cells which express the CD11b/CD18 receptor is at least 75% lower, preferably still at least 80%, 85%, 90% or 95% lower, than that the Bordetella pertussis CyaA toxin, or than that of a Bordetella pertussis CyaA protein whose adenylate cyclase activity is partly or totally suppressed (or "CyaA toxoid"). In a particularly preferred embodiment, the overall cytolytic activity of the polypeptide according to the invention on cells which express the CD11b/CD18 receptor is at least 75% lower, preferably still at least 80% or 85% lower, than that the Bordetella pertussis CyaA toxoid whose amino acid sequence is shown in FIG. 2 (SEQ ID No 2).
[0052] In a preferred embodiment, the invention relates to a polypeptide which is a mutant of an adenylate cyclase and whose amino acid sequence comprises or consists of an amino acid sequence (i) which is mutated with respect to the amino acid sequence disclosed in SEQ ID No 1 said mutations comprising at least the substitutions E570Q and K860R or (ii) which is a fragment of the CyaA protein having said amino acid sequence disclosed as SEQ ID No 1, to the extent that said fragment has an amino acid sequence including substitutions E570Q and K860R and wherein the polypeptide is capable of binding to a target cell and of translocating its N-terminal domain into the cell.
[0053] In a particular embodiment of the present invention, the fragment including a substitution of the glutamic acid residue at position 570 of SEQ ID No 1 by a glutamine residue (referred to as "E570Q"), and the substitution of the lysine residue at position 860 of SEQ ID No 1 by an arginine residue (referred to as "K860R") encompasses at least the amino acid sequence of the CyaA protein starting with the first N-terminal residue or from one of the amino acid residues comprised between the positions 1 and 400, preferably between the positions 1 and 380 and extending up to the residues forming the recognition and binding site for the CD11b/CD18 cell receptor and said fragment contains residues corresponding to the mutated E570Q and K860R residues or consists of said amino acid sequence. In a particular embodiment, the fragment including the E570Q and K860R substitutions does not comprise the amino acid sequence running from the amino acid at position 1 of SEQ ID No 1 to the amino acid at position 372 of SEQ ID No 1.
[0054] In a preferred embodiment the fragment which is thus prepared has essentially lost the adenyl cyclase enzyme activity (AC activity) In a preferred embodiment, the mutant polypeptide of the invention is produced by co-expression in a recombinant cell of a mutated gene encoding the E570Q and R860R mutated CyaA amino acid sequence and of the cyaC gene, followed by recovery of the selected expressed fragment of mutant CyaA.
[0055] Preferably, the mutant polypeptide of the invention has a lysine residue which corresponds to the lysine residue at position 983 of the CyaA amino acid sequence as set forth in SEQ ID No 1 and which is acylated, in particular which is palmytoylated or palmitoleilated.
[0056] Alternatively, the mutant polypeptide of the invention has a lysine residue which corresponds to the lysine residue at position 983 of the CyaA amino acid sequence as set forth in SEQ ID No 1 which is not acylated.
[0057] In a specific embodiment, the mutant polypeptide of the invention has an amino acid sequence derived from the CyaA amino acid sequence disclosed in SEQ ID No 1 by mutation of residues resulting in E570Q and K860R and has an amino acid sequence which shares at least 50%, preferably at least 60%, 70%, 75%, 80%, 85%, 90%, 95% or 99% identity with the sequence set forth in SEQ ID No 1.
[0058] In another specific embodiment, the mutant polypeptide of the invention has an amino acid sequence which differs from the CyaA amino acid sequence as set forth in SEQ ID No 1 by mutation of residues resulting in E570Q and K860R and by further mutations resulting in 1 to 500, in particular, 1 to 400, 1 to 300, 1 to 200, 1 to 100, 1 to 50, 1 to 40, 1 to 30, 1 to 25, 1 to 20, 1 to 15, 1 to 10 or 1 to 5 amino acid residue substitutions, deletions, and/or insertions including the E570Q and K860R substitutions.
[0059] In a specific embodiment, the mutant polypeptide of the invention does not carry any amino acid residue substitutions, deletions, and/or insertions as compared to the Bordetella pertussis CyaA amino acid sequence other than the E570Q and K860R substitutions. In a specific embodiment, the mutant polypeptide has amino acid sequence of SEQ ID No 2 as illustrated in FIG. 7. In another specific embodiment, the only further amino acid substitutions, deletions, and/or insertions as compared to the amino acid sequence of SEQ ID No 2 consist in amino acid substitutions, deletions, and/or insertions which totally or partially suppress the adenyl cyclase enzymatic activity of the CyaA protein, such as in particular the insertion of a dipeptide, for example an "LQ" or "GS" dipeptide between the amino acids at positions 188 and 189.
[0060] In a particular embodiment, the mutant polypeptide of the invention differs from the CyaA amino acid sequence as set forth in SEQ ID No 1 by 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acid residue substitutions, deletions, and/or insertions in addition to the E570Q and K860R substitutions.
[0061] In a particular embodiment, in addition to the E570Q and K860R substitutions, the leucine residue at position 247 of the native CyaA protein of Bordetella pertussis is substituted by a glutamine residue (L247Q) or by another amino acid residue in particular a conservative amino acid residue.
[0062] A mutant polypeptide of the invention which is a fragment as disclosed herein of the amino acid sequence disclosed in SEQ ID No 1 is to be understood as a sequence which comprises one or more fragments having at least about 350 amino acid residues and up to about 1705 amino acid residues of the SEQ ID No 1 amino acid sequence, in particular fragments comprising a stretch of at least 400, 500, 600, 700, 800, 900, 1000, 1100, 1200, 1300, 1400, 1500, 1600 amino acid residues of SEQ ID No 1, encompassing residues E570Q and K860R. A mutant polypeptide of the invention can also be defined as a fragment of the amino acid sequence disclosed in SEQ ID No 2 which comprises one or more fragments having at least about 350 amino acid residues and up to about 1705 amino acid residues of the SEQ ID No 2 amino acid sequence, in particular fragments comprising a stretch of at least 400, 500, 600, 700, 800, 900, 1000, 1100, 1200, 1300, 1400, 1500, 1600 amino acid residues of SEQ ID No 2, encompassing residues 570 and 860. Said fragments preferably retain the capacity of binding to the CD11b/CD18 cell receptor and the ability to translocate their N-terminal domain into target cells. Preferably, the mutant polypeptide of the invention which is such a fragment which has a stretch of amino acids comprising amino acid residues 570 as E570Q to 860 as K860R or 1 to 860, or 2 to 860 of SEQ ID No 1 to the extent that the E570Q and K860R mutations are observed with respect to the original SEQ ID No 1.
[0063] In a preferred embodiment, the fragment further comprises amino acid residues 1166 to 1281 or amino acid residues 1208 to 1243 of the CyaA amino acid sequence as set forth in SEQ ID No 1 of CyaA protein for interaction with CD11b/CD18 target cells.
[0064] A particular fragment thus encompasses all or part of the C-terminal part of the native protein which part is responsible for the binding of the polypeptide of the invention to target cell membrane and/or CD11b/CD18 receptor, and for the subsequent delivery of the N-terminal domain of the polypeptide into the cell cytosol. A particular polypeptide of the invention is the fragment of CyaA protein which contains amino acid residues 373 to 1706 of CyaA protein especially of the SEQ ID No 1, to the extent that residues 570 and 860 are mutated as E570Q and K860R.
[0065] In another preferred embodiment, the mutant polypeptide which is such a fragment comprises:
[0066] a) a first amino acid sequence which corresponds to a stretch of at least 100 contiguous amino acid residues from SEQ ID No 1 comprising amino acid residues 570 as E570Q, and further including 0, 1, 2, 3, 4 or 5 deletions, substitutions or insertions as compared to SEQ ID No 1 and
[0067] b) a second amino acid sequence which corresponds to a stretch of at least 100 contiguous amino acid residues from SEQ ID No 1 comprising amino acid residues 860 as K860R, and further including 0, 1, 2, 3, 4 or 5 deletions, substitutions or insertions as compared to SEQ ID No 1 and preferably,
[0068] c) a third amino acid sequence comprising amino acid residues 1166 to 1281 or amino acid residues 1208 to 1243 of the CyaA amino acid sequence as set forth in SEQ ID No 1 of CyaA protein for interaction with CD11b/CD18 target cells.
[0069] Another particular polypeptide of the invention is a fragment which is one which corresponds to the E570Q and K860R mutated CyaA protein wherein amino acid residues 225 to 234 have been deleted, thus providing a fragment containing residues 1 to 224 and 235 to 1706 of the mutated protein.
[0070] In a particularly preferred embodiment, the polypeptide fragment according to the invention binds to a cell which expresses the CD11b/CD18 receptor as a result of specific binding to said receptor.
[0071] In a preferred embodiment, adenylate cyclase activity of the polypeptide in a cell is partly or totally suppressed as compared to that of the Bordetella pertussis CyaA toxin. As stated above, the expression "CyaA protein" relates either to the toxin form or preferably to the toxoid form of the protein. Accordingly each embodiment of the invention relating to the polypeptide which is a mutant of the CyaA protein applies to each of the toxin or toxoid form of the protein.
[0072] Total or partial suppression of CyaA adenylate cyclase or enzymatic activity is to be understood as the total or partial suppression of the ability to convert ATP into cAMP in a cellular environment as compared to that of a CyaA toxin produced by co-expression of the cyaA and cyaC genes in a cell. The ability to convert ATP into cAMP can be determined by measuring the level of intracellular cAMP as described in the examples.
[0073] Such total or partial suppression can be obtained as a result of genetic inactivation, for example by introduction of a short amino acid sequence sequence, comprising for example from one to ten amino acids, in particular a dipeptide in a site of the amino acid sequence of CyaA which is part of the catalytic site, i.e. in a site located within the first 400 amino acids (AC domain) of SEQ ID No 1 or by deletion or substitution of a part of the CyaA amino acid sequence as set forth in SEQ ID No 1 which is essential for enzymatic activity. In a preferred embodiment, total or partial suppression of the CyaA enzymatic activity is obtained by insertion of a dipeptide, for example an "LQ" or "GS" dipeptide, between the amino acids at position 188 and 189 of the CyaA sequence as set forth in SEQ ID No 1. This can be achieved by inserting an oligonucleotide, such as "CTG CAG" or "CGATCC", at the EcoRV site at position 564 of the coding phase of the cyaA gene. See Ladant et al., 1992. Alternatively, total or partial suppression of the enzymatic activity can also be obtained by directed mutagenesis, for example, by replacing the lysine residue at position 58 or 65 of the native CyaA Bordetella pertussis protein (Glaser et al., 1989) by a Gln residue.
[0074] The polypeptide according to the invention can also be defined as a polypeptide which may be obtained from a CyaA polypeptide having an amino acid sequence according to SEQ ID No 1, 7, 8 or 9, by:
[0075] a) substituting the glutamic acid residue at position 570 of SEQ ID No 1, 7, 8 or at position 569 of SEQ ID No 9 by a glutamine residue or by a conservative amino acid residue,
[0076] b) substituting the lysine residue at position 860 of SEQ ID No 1, 7, 8 or at position 859 of SEQ ID No 9 by an arginine residue or by a conservative amino acid residue, and
[0077] c) optionally, carrying out one or more amino acid residue substitutions, insertions and/or deletions at locations other than the locations recited in a) and b), provided that the polypeptide thus obtained has the capacity of the CyaA protein of Bordetella pertussis to bind to a target cell and translocate its N-terminal adenylate cyclase enzyme domain or part thereof into said cell.
[0078] Preferably, in step a), the glutamic acid residue is substituted by an amino acid residue selected from Gln, Asn, Met, Thr, Ser, Gly, Arg, Lys, Val, Leu, Cys, Ile, Asp, most preferably by Gln. Preferably, in step b), the lysine residue is substituted by an amino acid residue selected from Arg, Asn, Gln, Met, Thr, Ser, Gly, Val, Leu, Cys, Ile, most preferably by Arg.
[0079] In a specific embodiment, no further amino acid residue substitutions, insertions and/or deletions are carried out in step c).
[0080] In particular, step c) may comprise truncation of either or both terminal ends. In particular, residues at the C-terminal end may be deleted to the extent that it does not affect the recognition and binding site for the CD11b/CD18 cell receptor. Alternatively or in addition, residues may be deleted at the N-terminal end provided that it does not affect the translocation ability of the obtained mutant polypeptide. Internal deletions of one or more residues of the native CyaA protein located at positions other than those recited in steps a) and b) may also be performed. In a particular embodiment, step c) comprises the deletion of up to 380 or up to 400 amino acids in the N-terminal amino acid sequence of the CyaA polypeptide, preferably the deletion of the stretch of amino acids running from the amino acid at position 1 of SEQ ID No 1, 7, 8 or 9 to the amino acid at position 372 of SEQ ID No 1, 7, 8 or 9.
[0081] Preferably, after performing step c), the obtained polypeptide encompasses all or part of the C-terminal part of the native protein which part is responsible for the binding of the polypeptide of the invention to the membrane of the target cell and/or CD11b/CD18 receptor, and for the subsequent delivery of the N-terminal domain of the polypeptide into the cell cytosol. In a particular embodiment, in step c), amino acid residues 373 to 1706 of SEQ ID No 1, 7 or 8, or amino acid residues 373 to 1705 of SEQ ID No 9 are not deleted. In a preferred embodiment, in step c), amino acid residues 1208 to 1243 of SEQ ID No 1, 7 or 8, or amino acid residues 1207 to 1242 of SEQ ID No 9 are not deleted.
[0082] In a preferred embodiment, step c) comprises amino acid substitutions, deletions, and/or insertions which totally or partially suppress the adenyl cyclase enzymatic activity of the CyaA protein. Such total or partial suppression can be obtained by introduction of a short amino acid sequence, comprising for example from one to ten amino acids, in particular a dipeptide in a site located within the first 400 amino acids (AC domain) of SEQ ID No 1, 7, 8 or 9 or by deletion or substitution of a part of the CyaA amino acid sequence as set forth in SEQ ID No 1, 7, 8 or 9 which is essential for enzymatic activity. In a preferred embodiment, total or partial suppression of the CyaA enzymatic activity is obtained by insertion of a dipeptide, for example an "LQ" or "GS" dipeptide, between the amino acids at positions 188 and 189 of the CyaA sequence as set forth in SEQ ID No 1, 7, 8 or 9. Alternatively, total or partial suppression of the enzymatic activity can also be obtained by directed mutagenesis, for example, by replacing the lysine residue at position 58 or 65 of the native CyaA Bordetella pertussis protein (Glaser et al., 1989) by a Gln residue.
[0083] Preferably, in step c) the lysine residue at position 983 of the CyaA amino acid sequence as set forth in SEQ ID No 1, 7, 8 or at position 982 in SEQ ID No 9 is neither substituted nor deleted. In one embodiment, this lysine residue is acylated, in particular it is palmytoylated or palmitoleilated. Alternatively, this lysine residue is not acylated.
[0084] Preferably, after performing step c), the obtained polypeptide has an amino acid sequence which shares at least 50%, preferably at least 60%, 70%, 75%, 80%, 85%, 90%, 95% or 99% identity with the sequence set forth in SEQ ID No 1, 7, 8 or 9.
[0085] Preferably still, after performing step c), the obtained polypeptide has an amino acid sequence which differs from the sequence set forth in SEQ ID No 1, 7, 8 or 9 by the amino acid residue substitutions resulting from steps a) and b), and by 1 to 500, in particular, 1 to 400, 1 to 300, 1 to 200, 1 to 100, 1 to 50, 1 to 40, 1 to 30, 1 to 25, 1 to 20, 1 to 15, 1 to 10 or 1 to 5 further amino acid residue substitutions, deletions, and/or insertions. In a particular embodiment, after performing step c), the obtained polypeptide differs from the CyaA amino acid sequence as set forth in SEQ ID No 1, 7, 8 or 9 by 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acid residue substitutions, deletions, and/or insertions in addition to the substitutions carried out in steps a) and b).
[0086] The invention is also directed to a polypeptide derivative comprising or consisting of the mutant polypeptide according to the invention which is further combined with one or more molecules of interest. In a preferred embodiment, a molecule of interest is a biologically active molecule either when taken alone or when combined to the polypeptide of the invention. Said molecules may especially be of prophylactic value or therapeutic value i.e., may have a prophylactic or a therapeutic activity, or may enhance a prophylactic or therapeutic activity.
[0087] In specific embodiments, the molecules of interest are selected in the group comprising: peptides, glycopeptides, lipopeptides, polysaccharides, oligosaccharides, nucleic acids, lipids and chemicals.
[0088] In a specific embodiment, the one or more molecules of interest are polypeptidic molecules or contain polypeptidic molecules. Their amino acid sequence may comprise 2 to 1000, preferably 5-800, 5 to 500, 5 to 200, 5 to 100, 8 to 50, 5 to 25, 5 to 20 or 8 to 16, or 300-600, 400-500, amino acid residues.
[0089] In a preferred embodiment, the one or more molecules of interest are heterologous amino acid sequences suitable for eliciting an immune response (also referred to as "heterologous antigens"), in particular amino acid sequences which comprise or consist of an epitope, including antigens. As used herein, the term "heterologous" refers to an antigen other than the mutant polypeptide which is used in the vector itself. As used herein, the term "epitope" refers to a heterologous molecule and especially a heterologous peptide that can elicit an immune response, when presented to the immune system of a host. In particular, such an epitope can comprise or consist of a stretch of 8, 9, 10, 11, 12, 13, 14, 15 or 16 amino acid residues. It may alternatively consist in a full-length antigen or consist in antigen(s) fragment(s).
[0090] In a specific embodiment, a polypeptide derivative according to the invention can be encoded by a plasmid which corresponds to the OVA-QR-AC- plasmid deposited under accession number CNCM 1-4137 (FIG. 12) in which the DNA sequence encoding the "OVA" antigenic sequence is replaced by a DNA sequence encoding an antigenic sequence comprising one or more epitopes.
[0091] The polypeptidic molecule suitable for eliciting an immune response is especially one eliciting a T-cell immune response, including as an example a CTL response. The polypeptidic molecule suitable for eliciting an immune response can also be one eliciting a B-cell immune response.
[0092] In specific embodiments, the heterologous antigen is selected from the group consisting of an antigen of a bacterial pathogen, a tumoral cell antigen, a viral antigen, a retroviral antigen, a fungus antigen or a parasite cell antigen.
[0093] A molecule of interest can be especially an antigen selected from the group consisting of: a Chlamidia antigen, a Mycoplasma antigen, a hepatitis virus antigen, a poliovirus antigen, an HIV virus antigen, an influenza virus antigen, a choriomeningitis virus antigen, a tumor antigen, or a part of any of these antigens which comprises at least an epitope.
[0094] In a preferred embodiment of the polypeptide derivative of the invention, the amino acid sequence of each of said molecule(s) suitable for eliciting an immune response comprises or consists of an amino acid sequence of a Chlamidia antigen, a Mycoplasma antigen, a hepatitis virus antigen, a poliovirus antigen, an HIV virus antigen, an influenza virus antigen, a choriomeningitis virus sequence, a tumor antigen, or comprises or consist of a part of an amino acid sequence of any these antigens which comprises at least one epitope.
[0095] In a particularly preferred embodiment, the molecule of interest is a tumor associated antigen (TAA). Tumor-associated antigens have been characterized for a number of tumors such as for example: Melanoma, especially metastatic melanoma; Lung carcinoma; Head & neck carcinoma; cervical carcinoma, Esophageal carcinoma; Bladder carcinoma, especially infiltrating Bladder carcinoma; Prostate carcinoma; Breast carcinoma; Colorectal carcinoma; Renal cell carcinoma; Sarcoma; Leukemia; Myeloma. For these various histological types of cancers, it has been shown that antigenic peptides are specifically expressed on tumor samples and are recognized by T cells, especially by CD8+ T cells or CD4+ T cells.
[0096] A review of peptides found as tumor-associated antigens in these types of tumors is made by Van der Bruggen P. et al (Immunological Reviews, 2002, vol 188:51-64). Especially, the disclosure of the peptides contained in table 3 of said review is referred to herein as providing examples of such tumor-associated antigens and said table 3 is incorporated by reference to the present application.
[0097] The following antigens are cited as examples of tumor-associated antigens recognized by T cells, according to the publication of Kawakami Y. et al (Cancer Sci, October 2004, vol. 95, no. 10, p 784-791) that also provides methods for screening these antigens or further one: antigens shared by various cancers, including MAGE (especially in Melanoma), NY-ESO-1, Her2/neu, WT1, Survivin, hTERT, CEA, AFP, SART3, GnT-V, antigens specific for some particular cancers such as βbeta-catenin, CDK4, MART-2, MUM3, gp100, MART-1, tyrosinase for Melanoma; bcr-abl, TEL-AML1 for Leukemia; PSA, PAP, PSM, PSMA for prostate cancer; Proteinase 3 for myelogenous leukemia; MUC-1 for breast, ovarian or pancreas cancers; EBV-EBNA, HTLV-1 tax for lymphoma, ATL or cervical cancer; mutated HLA-A2 for Renal cell cancer; HA1 for leukemia/lymphoma. Tumor-associated antigens in animals have also been described such as Cycline D1 and Cycline D2 in tumors affecting cats or dogs.
[0098] Tumor-associated antigens recognized by T cells have also been disclosed in Novellino L. et al (Immunol Immunother 2004, 54:187-207).
[0099] More generally, TAA of interest in the present invention are those corresponding to mutated antigens, or to antigens that are overexpressed on tumor cells, to shared antigens, tissue-specific differenciation antigens or to viral antigens.
[0100] In a particular embodiment of the invention, the tumor-associated antigen is an antigen of papillomavirus (HPV) or is tyrosinase.
[0101] According to another particular embodiment of the invention, the amino acid sequences of the polypeptidic molecules which comprise or consist of an epitope have been modified with respect to their native amino acid sequence, for example in order to decrease the number of negatively charged amino acid residues within the sequence. Such a modification can be obtained by removing some of these negatively charged amino acid residues or also by adding some positively charged amino acid residues, especially as flanking residues of the epitopes. Polypeptides thus comprising less negatively charged residues might favour the translocation of the catalytic domain of the polypeptide derivative of the invention in the cytosol of target cells.
[0102] The amino acid sequences of the polypeptidic molecules which comprise or consist of an epitope or an antigen can also be designed in such a way that they are unfolded when they are inserted in the polypeptide derivative of the invention, which improves efficiency of the internalization of the molecule(s) of interest according to the invention into the target cells. Such unfolding in polypeptides which undergo folding as a consequence of their amino acid content, can be obtained for instance, by removing or substituting cysteine residues in order to avoid formation of disulfide bonds that may be involved in folding of polypeptides. In some cases, it is possible to prevent folding of the polypeptides by preparing them in the presence of reducing agents to enable avoiding in vivo refolding.
[0103] In a particular embodiment, the amino acid sequences, especially the antigen, can comprise or consist of cryptic epitopes.
[0104] The inventors have indeed determined that polypeptide derivative constructs, which comprise (i) a polypeptide of the invention which is a mutant of a CyaA protein (polypeptide mutant) according to the definitions disclosed herein and (ii) a polypeptidic molecule having an amino acid sequence bearing one or several antigenic fragments of one or several antigens, enable cryptic epitopes of said antigens to become immunogenic as a result of their presentation in the constructs. Especially, said constructs involving mutant polypeptides as defined in the present invention comprising polypeptidic molecule(s) derived from antigens of interest for especially prophylactic or therapeutic applications, including immunotherapeutic vaccination, purposes are processed in target cells where the polypeptidic molecule(s) is allowed to be internalized as a result of the translocation of the N-terminal domain of the mutant polypeptide. Such processing enables epitopes presentation through the class I MHC molecules of the target cells, and said epitopes can comprise cryptic epitopes of the antigen which are allowed to become immunogenic and in particular to raise a T-cell response in a host, especially a CTL response.
[0105] The invention thus also relates to a polypeptide derivative, in particular to a recombinant protein comprising one or several polypeptidic molecules having an amino acid sequence bearing one or several epitopes of one or several antigens, or bearing said antigen(s) said amino acid sequence(s) of said polypeptidic molecule(s) being inserted in the same or in different sites, especially in different permissive sites of a mutant polypeptide according to the invention, said recombinant protein retaining the property of the CyaA toxin to target antigen presenting cells (APC), wherein at least one of said epitope(s) is a subdominant cryptic T-cell epitope and wherein said polypeptide derivative, especially said recombinant protein, is capable of eliciting an antigen-specific response against said polypeptidic molecule(s).
[0106] In a specific embodiment of the polypeptide derivative according to the invention, the one or more amino acid sequences are inserted into one or more sites, especially permissive sites.
[0107] For the present invention, a "permissive site" is a site of the sequence of the CyaA protein where a polypeptide can be inserted without substantially affecting the desired functional properties of the CyaA protein especially without substantially affecting the targeting of cells, particularly the targeting of antigen presenting cells (APC) by CyaA, including without substantially affecting the specific binding to the CD11b/CD18 receptor and advantageously without substantially affecting the domains of the protein involved in the process of translocation of the CyaA N-terminal domain into a target cell.
[0108] Methods to select for permissive sites are presented for example in WO93/21324, in Ladant et al., 1992, and in Osicka et al., 2000 (Infection and Immunity, 2000, 68(1):247-256). In particular, a methodology using a double selection (resistance to an antibiotic and colorimetric test on dishes by α-complementation) enables to identify readily oligonucleotides insertions (which preserve the reading frame) in the portion of the gene coding for the N-terminal catalytic domain of the toxin. The functional consequences of these mutations on the catalytic activity of the toxin may be readily analysed, both genetically (functional complementation of an E. coli cya- strain) and biochemically (characterization of the stability of the modified adenylcyclases, of their enzymatic activity, of their interaction with caM, etc.). This methodology has enabled a large number of mutations to be screened in order to identify the sites which are potentially advantageous for the insertion of antigenic determinants.
[0109] Permissive sites of the Bordetella pertussis adenylate cyclase allowing translocation of CyaA catalytic domain and hence translocation of amino acid sequences inserted into such permissive sites include, but are not limited to, residues 137-138 (Val-Ala), residues 224-225 (Arg-Ala), residues 228-229 (Glu-Ala), residues 235-236 (Arg-Glu), and residues 317-318 (Ser-Ala) (Sebo et al., 1995). The following additional permissive sites are also included in embodiments of the invention: residues 107-108 (Gly-His), residues 132-133 (Met-Ala), residues 232-233 (Gly-Leu), and 335-336 (Gly-Gln) and 336-337. However, other permissive sites may be used in the present invention, that can be identified for example by use of the methodology indicated above, especially sites between residues 400 and 1700 of the CyaA protein.
[0110] For other Bordetella species corresponding permissive sites can be defined by comparison of sequences and determination of corresponding residues.
[0111] According to another embodiment, the one or more amino acid sequence polypeptide can also or alternatively be inserted at one and/or the other extremities (ends) of the polypeptide of the invention, preferably at the N-terminal end of the mutant CyaA polypeptide lacking all or part of the N-terminal catalytic domain of the Bordetella pertussis CyaA protein, and more particularly lacking residues 1-373.
[0112] According to a specific embodiment, the one or more amino acid sequences suitable for eliciting an immune response, is grafted onto an amino acid residue of said polypeptide.
[0113] According to the invention, the "combination" (or insertion) of an amino acid sequence with the CyaA mutant polypeptide to provide a so-called polypeptide derivative, also referred to as a "recombinant protein" or a "hybrid protein", encompasses genetic insertion especially by available DNA technology. Alternatively, "combination" also encompasses non genetic insertion, including chemical insertion for instance covalent coupling carried out especially at one extremity of the amino acid sequence, or non covalent coupling. Non-genetic insertion can especially be of interest when the amino acid sequence to be inserted is synthetic or semi-synthetic. Methods for coupling a drug to a polypeptide are well known in the Art and comprise for example disulfide linkage by using N-pyridyl sulfonyl-activated sulfhydryl.
[0114] In particular, it is possible to graft molecules to the polypeptides of the invention by a chemical linkage or by genetic insertion for in vivo targeting to CyaA target cells, such as APC, for example CD11b/CD18 positive cells and particularly to the cytosol of said cells. Indeed, when coupling a molecule corresponding to a given CD8+ T-cell epitope to the catalytic domain of detoxified CyaA, either by means of a disulfide bond or by genetic insertion, it has been found that the engineered molecule can elicit in vivo specific CTL response, thereby showing that said CD8+ T-cell epitope is translocated into the cytosol of CD11b-expressing cells.
[0115] In a preferred embodiment of the invention, the mutant CyaA polypeptide is used in the manufacturing of a proteinaceous vector or in the preparation of a composition specifically designed to prime CD8+ cytoxic T-cell response (CTL response) when said response follows the targeting of the mutant CyaA polypeptide modified (especially recombined or conjugated) with a molecule of interest to CD11b expressing cells, followed by the translocation of the molecule of interest to the cytosol of said CD11b expressing cells, and in particular to myeloid dendritic cells. In this context, the molecule of interest is or comprises preferably an epitope or an antigen.
[0116] In another preferred embodiment of the invention, the mutant CyaA polypeptide is used in the manufacturing of the proteinaceous vector or in the preparation of a composition specifically designed to prime CD4+ cells response when said response follows the targeting of the adenylcyclase modified (especially recombined or conjugated) with a molecule of interest to CD11b expressing cells, in particular myeloid dendritic cells. In this context, the molecule of interest is or comprises preferably an epitope or an antigen.
[0117] The mutant polypeptides can also be used in the manufacturing of a proteinaceous vector for targeting of a prophylactic or a therapeutic compound to CD11b expressing cells. In this context, in one specific embodiment of the invention, the so-called molecule of interest has a prophylactic or therapeutic value and in particular is a drug. Said prophylactic or therapeutic compound and in particular said drug may be chemically or genetically coupled to the mutant polypeptide. Method for coupling a compound to a polypeptide are well known in the Art and comprise for example disulfide linkage by using N-pyridyl sulfonyl-activated sulfhydryl. In one embodiment, a molecule of interest is an anti-inflammatory compound which is, when coupled to the mutant polypeptide, specifically targeted to the surface of the cells involved of the inflammatory response, such as dendritic cells or neutrophils.
[0118] More specifically, antigen presentation for selective CD8+ cytotoxic cells priming is mainly performed by myeloid dendritic cells.
[0119] Accordingly, in a specific embodiment, the mutant CyaA polypeptide used for the manufacturing of proteinaceous vector is a genetically modified adenylcyclase containing one or more molecule(s) chemically coupled by means of a disulfide bond to genetically inserted cysteine residue(s) located within the catalytic domain of the mutant CyaA polypeptide. Indeed, multiple molecules can be chemically coupled to the mutant CyaA polypeptide by means of a disulfide bond to different cysteine residues located at different permissive sites within the catalytic domain.
[0120] The mutant polypeptides or polypeptide derivatives according to the invention are suitable for use in therapy or prophylaxis.
[0121] By therapy or therapeutic effect it is intended any effect which is beneficial to the condition of a patient, be it curative or sufficient to limit the symptoms or the consequences of a pathological condition, including limiting the progression of a pathological condition. By therapy or therapeutic effect is also encompassed the prevention of the onset of pathological condition.
[0122] The mutant polypeptides or polypeptide derivatives according to the invention are in particular suitable to elicit a cell-mediated immune response such as a T-cell immune response or a B-cell immune response in a host in need thereof. It includes CTL and Th, especially Th1 response, including CD4+ T cell response and/or CD8+ T cell response.
[0123] The ability of a polypeptide derived from CyaA protein to elicit a cell-mediated immune response may be sufficient to prevent tumor growth in vivo or even to enable tumor regression in an animal. It may also be enhanced by activation of innate component of the immune response through TLR activation and by down activating the regulatory component of the immune response through the use of chemotherapeutic agents. The invention provides means which should enable such results to be obtained in improved safety conditions as a result of the combined mutations E570Q and K860R, which have been selected.
[0124] The present invention is thus also directed to therapeutic methods comprising administration to an animal or human patient of the mutant polypeptide or polypeptide derivative according to the invention to a patient to elicit a T-cell immune response or a B-cell immune response in a host in need thereof.
[0125] The mutant polypeptides or polypeptide derivatives according to the invention can in particular be used for the prevention or the treatment of a disease selected from neoplasia, cancers and infectious diseases selected from viral-, retroviral-, bacterial- or fungal-induced diseases. In particular, the polypeptide derivatives can be used for the treatment of HIV infections in a patient.
[0126] It is especially provided that in a particular embodiment of the invention, the CyaA mutant polypeptide or polypeptide derivative is suitable for the treatment of infiltrating or vascularized tumors versus superficial tumors or for the treatment of metastatic tumors versus primary tumors, in accordance with the acknowledged clinical criteria for the classification of tumors.
[0127] Solid tumors are especially a target for the treatment through the use of the polypeptide derivative of the invention.
[0128] Among tumors which may be candidates for the treatment with the polypeptide derivative of the invention, the following, for which tumor-associated antigens have been characterized, are described as examples:
[0129] Melanoma, especially metastatic melanoma; Lung carcinoma; Head & neck carcinoma; cervical carcinoma, Esophageal carcinoma; Bladder carcinoma, especially infiltrating Bladder carcinoma; Prostate carcinoma; Breast carcinoma; Colorectal carcinoma; Renal cell carcinoma; Sarcoma; Leukemia; Myeloma. For these various histological types of cancers, it has been shown that antigenic peptides are specifically expressed on tumor samples and are recognized by T cells, especially by CD8+ T cells or CD4+T cells.
[0130] The invention further relates to the use of a polypeptide derivative according to the invention, for the preparation of a therapeutic composition for the treatment of a disease selected from neoplasia, cancers and infectious diseases selected from viral- or retroviral-induced diseases.
[0131] In a preferred embodiment, the polypeptide or polypeptide derivative according to the invention can be administered to the patient in combination with an adjuvant and/or in combination with another therapeutically active molecule or agent.
[0132] In the context of the present invention said "another therapeutically active molecule or agent" is one which may be beneficial to the condition of a patient to whom it is administered. It is especially an active principle suitable for use in the manufacturing of a drug. It may be a compound suitable to either, potentiate increase or modulate the effect of a therapeutically active principle.
[0133] The mutant CyaA polypeptide or the polypeptide derivative thereof can be administered with a therapeutically active molecule or agent, in particular one suitable for eliciting an immune response in a patient.
[0134] In particular, mutant CyaA polypeptide or the poplypeptide derivative thereof can be administered with a therapeutically active agent suitable for modulating a cell response in a patient, in particular by lowering or blocking regulatory T cells immunosuppressive capacity.
[0135] According to a particular embodiment of the invention, such an effect on a regulatory cell response may be obtained with an agent modulating a regulatory T cell and/or modulating another cell suppressive response, such as the myeloid suppressive cells response, said agent targeting said regulatory cells, especially T cells, by depleting or inactivating these cells (such as with CD25-specific antibody, or cyclophosphamide), altering trafficking of said cells, especially regulatory T cells (such as CCL22-specific antibody) or altering differentiation and signalling of said cells (such as by blocking FOXP3 (forkhead box P3) signal).
[0136] According to a particular embodiment of the invention, the agent modulating a regulatory cell response targets suppressive molecules, especially such molecules present on APCs (such as B7-H1, B7-H4, IDO (indoleamine 2,3-dioxygenase) or arginase) or on T cells (such as CTLA4 (cytotoxic T-lymphocyte-associated antigen 4) or PD1 (programmed cell death 1)), or targets soluble immunosuppressive molecules (such as TGF beta (transforming growth factor), IL-10, VEGF (vascular endothelial growth factor), COX2 (cyclooxygenase 2)).
[0137] As examples of agents having an effect on a regulatory cell response, cytotoxic agents are proposed, that can kill regulatory T cells or other immunosuppressive cells, or that can block their activity and/or development and/or accumulation.
[0138] In a particular embodiment of the invention, the agent modulating the regulatory cell response, especially a regulatory T cell response, is a chemotherapeutic agent. Especially it is selected among chemotherapeutic agents known as anticancer agents and used in chemotherapy. Such agents include those helping to reduce the tumor burden, those acting by increasing sensitivity of tumor cells to treatment or those enabling killing or inactivating immune regulatory cells. The chemotherapeutic agents used within the frame of the invention thereby enhance antitumor immunity.
[0139] In a particular embodiment of the invention, the chemotherapeutic agent is an alkylating agent. Especially, it is Cyclophosphamide (CTX) (Sigma, Steinheim, Germany). Cyclophosphamide is capable of depleting or inactivating regulatory T cells.
[0140] In another particular embodiment of the invention, the chemotherapeutic agent is an intercalating agent.
[0141] In a particular embodiment, the chemotherapeutic agent is Doxorubicin (DOX) (Calbiochem, La Jolla, Calif., USA).
[0142] The chemotherapeutic agent is advantageously administered by low doses.
[0143] The mutant CyaA polypeptide or the polypeptide derivative thereof can also be administered with an adjuvant component, suitable for activating the innate immune response primed by a tumor in a patient.
[0144] In a particular embodiment of the invention, the adjuvant component is selected in the group of components consisting of nucleic acids, peptidoglycans, carbohydrates, peptides, cytokines, hormones and small molecules, wherein said adjuvant component is capable of signaling through pattern-recognition receptors (PRRs).
[0145] PRRs are known to mediate the innate immune response to pathogens, and to tumors, by recognition of so-called evolutionarily conserved signatures from pathogens (pathogen-associated molecule patterns, PAMPs). PRRs are present on a variety of immune cells including dendritic cells, natural killer cells, B cells, and also on some non immune cells such as epithelial cells or endothelial cells. PRRs and their involvement in the innate immune response are described in Pashine A. et al (Nature medicine supplement volume 11, No 4, April 2005).
[0146] In particular an adjuvant component for the activation of the innate immune response can target PRRs and therefore activate signaling through PRRs, wherein said PRRs encompass Toll-like receptors or nucleotide-binding oligomerization domain (NOD) or C type lectin.
[0147] In a particular embodiment of the invention, the adjuvant component is a Toll-like receptor (TLR) agonist. The Toll-like receptor agonist is especially formulated to efficiently activate the innate immune system of a patient. Said TLR agonist is capable of binding the TLR, i.e., is a ligand of the TLR and is furthermore capable of enhancing the immune response elicited under the control of said TLR.
[0148] For illustration, TLR agonists are selected from the group of TLR-9, TLR-8, TLR-3 and TLR-7 agonists. However agonists of other TLR receptors may be used to perform the invention, such as agonists of the TLR2, TLR4, TLR5 receptors.
[0149] The TLR agonist used in the invention can be a natural or a synthetic agonist. It can be a combination of different agonists of the same or of different toll-like receptors.
[0150] According to a particular embodiment of the invention, the TLR agonist is an immunostimulatory nucleotide sequence, especially a stabilized nucleotide sequence, for example stabilized as a result of structure modification such as phosphorothioate modification. The nucleotide sequence can also be protected against degradation by specific formulation. Especially liposome formulation thereof, e.g. liposome suspension, can be advantageous for the efficient administration of the immunostimulatory nucleotide sequence.
[0151] In a particular embodiment of the invention, the immunostimulatory nucleic acid sequence is a single-stranded RNA.
[0152] In a particular embodiment of the invention, the immunostimulatory nucleotide sequence comprises a CpG motif and especially is a CpG oligonucleotide (CpG ODNs). As an example of suitable CpG oligonucleotides the invention provides TLR-9 ligands such as Type A CpG ODN, i.e., CpG 2216 having nucleotide sequence 5'-GGGGGACGATCGTCGGGGGG-3' or Type B CpG ODN, i.e., CpG 1826 having nucleotide sequence 5'-TCCATGACGTTCCTGACGTT-3'.
[0153] CpG oligonucleotide can be used after being complexed with DOTAP (Roche Manheim, Germany), in order to protect it against degradation and to facilitate its uptake.
[0154] According to another particular embodiment of the invention, the TLR agonist is a small molecule. Small molecules suitable as TLR agonists are for example imidazoquinoline amine derivatives, such as the one named R848 (resiquimod), i.e., 4-amino-2-ethoxymethyl-a,a, dimethyl-1-H-imidazo[4,5c]quinoline-1-ethanol available from Invivogen, as TLR-7 ligand, or the one named R837 (imiqimod) available from Aldara as TLR-7 agonist.
[0155] Other molecules suitable as TLR agonists are polyuridine (pU) as TLR-3 ligand, or polycytidylic acid (PIC) as TLR-7 ligand.
[0156] These molecules can be formulated to facilitate their uptake and/or to protect them from degradation. These molecules can also be prepared as a liposome formulation, especially as a liposome suspension, for administration to a patient.
[0157] According to another particular embodiment of the invention, the adjuvant component can be a cell-based adjuvant component. An example thereof is dendritic cells that are known to be able to prime lymphocyte response, such dendritic cells being possibly conditioned ex vivo prior to their administration, in order to increase their activity of stimulation of the T cell response. Dendritic cells can hence be stimulated with adjuvants interacting with the PRRs, including TLR ligands or agonists (Pashine A. et al Nature Medicine Supplement Volume 11, No 4, April 2005 p S63-S68)
[0158] Alternatively, the polypeptide or polypeptide derivative according to the invention can be administered to the patient without an adjuvant.
[0159] Indeed the inventors have previously shown that CTL specific for the vectorized antigen can be primed in vivo after a single intravenous injection of the recombinant toxin, especially with no need to provide an heterologous adjuvant. These results and in particular the specific targeting of the epitope to myeloid dendritic cells enable to bypass the requirement for adjuvant and CD4+ T cell help.
[0160] Therefore, the invention also relates to the use of a mutant CyaA polypeptide recombined with a molecule and especially a peptide of interest for the preparation of a composition formulated for intravenous administration and enabling a CD8+ T cell immune response in vivo, said composition being free of a heterologous adjuvant. The invention also concerns this composition as such.
[0161] The present invention is further directed to therapeutic methods comprising administration of the mutant polypeptide or polypeptide derivative according to the invention to an animal or human patient suffering from a disease selected from neoplasia, cancers and infectious diseases selected from viral-, retroviral-, bacterial- or fungal-induced diseases.
[0162] The mutant polypeptide or polypeptide derivative can in particular be administered with a therapeutically active molecule and/or an adjuvant.
[0163] The mutant CyaA polypeptide or the polypeptide derivative, the therapeutically active molecule and/or an adjuvant can be administered together as part of a pharmaceutical composition which further comprises a pharmaceutically acceptable carrier or excipient(s).
[0164] Alternatively, the various types of molecules described herein to carry out the invention used, can be administered separately either simultaneously in time (especially for the mutant CyaA polypeptide or the polypeptide derivative and the adjuvant) or separately in time (especially for the mutant CyaA polypeptide).
[0165] The administration of the therapeutically active molecule can alternatively be carried out prior and after the administration of the mutant CyaA polypeptide or the polypeptide derivative and/or the adjuvant. It can also be sequential in time.
[0166] A particular regimen that may be adopted is a repeated administration protocol, especially in a protocol which encompasses two rounds or more of administration of at least one of the compounds selected from the mutant CyaA polypeptide or the polypeptide derivative, the therapeutically active agent and/or the adjuvant.
[0167] The invention is also directed to a pharmaceutical composition which comprises a mutant CyaA polypeptide or a polypeptide derivative according to the invention, a pharmaceutically acceptable carrier or excipient(s), and optionally an adjuvant and/or another therapeutically active molecule.
[0168] The invention is also directed to a kit of parts comprising the mutant CyaA polypeptide or the polypeptide derivative, a therapeutically active molecule and/or an adjuvant.
[0169] The compounds of the kit of parts or the composition of the invention can especially be given to the patient through intravenous administration, intratumoral administration or subcutaneous administration.
[0170] The kit of parts of the invention or the composition has the ability to target (i) the adaptive immune response, through the mutant CyaA polypeptide or the polypeptide derivative disclosed in the present application, (ii) to downregulate the regulatory immune response through the therapeutically active agent, and if the adjuvant is present, to target (iii) the innate component of the immune response, by activating said innate response through the adjuvant.
[0171] The invention also relates to a method of treatment of a patient in need thereof, either a human or an animal patient, comprising the step of administering the components of the kit of parts or of the composition herein disclosed.
[0172] The invention in particular also relates to a new immunogenic composition formulated for administration, especially intravenous administration, in an animal or human host, characterized in that it comprises a recombinant CyaA polypeptide derivative which comprises an antigen inserted in the catalytic domain.
[0173] The invention further relates to a pharmaceutical composition for administration in a human or an animal formulated for targeting a molecule of interest specifically to CD11b expressing cells characterized in that said molecule of interest is coupled to a mutant CyaA polypeptide as described herein.
[0174] In another specific embodiment, the pharmaceutical or immunogenic composition comprises a nucleic acid construction encoding the recombinant CyaA polypeptide derivative comprising a CyaA mutant polypeptide as defined herein coupled to a molecule of interest.
[0175] Furthermore, the invention also relates to the use of the immunogenic composition as defined above for the preparation of a vaccine or an immunotherapeutic composition, for administration to an animal or human host.
[0176] As used herein, the term "immunotherapeutic composition" relates to a composition which leads to an immunological response and which is associated to therapeutic treatments, such as treatment against neoplasia, cancers, viral infections, fungal infections, parasites infections or bacterial infections.
[0177] The invention further relates to a method to immunize an animal or human host, wherein said method comprises the steps of:
[0178] a) providing an immunogenic composition as defined above;
[0179] b) administering said immunogenic composition, preferably via intravenous route, to said host in order to promote an immune response.
[0180] In particular, the immunogenic compositions of the invention are capable of inducing or stimulating, in vivo or in vitro an immune cell response involving specifically dendritic cells. The immunogenic compositions of the invention can in particular be used for preventive or therapeutic vaccination of a patient.
[0181] As a consequence, in a specific embodiment, the immunogenic or pharmaceutical composition is advantageously devoid of priming adjuvants commonly used in the Art, such as aluminium hydroxide.
[0182] The invention further relates to a method for the preparation of a proteinaceous vector suitable for the delivery of a molecule of interest into a cell comprising binding the molecule of interest to a CyaA mutant polypeptide as defined herein.
[0183] The invention further relates to nucleic acid molecules, in particular DNA or RNA molecules, which encode a polypeptide or polypeptide derivative as defined above.
[0184] The invention is also directed to eukaryotic or prokaryotic cells which comprise the nucleic acid molecules as defined above.
[0185] The invention also relates to eukaryotic cells, preferably mammalian cells, which comprise a mutant CyaA polypeptide or polypeptide derivative as defined above. In a preferred embodiment, the cells are human cells.
[0186] The invention further relates to eukaryotic cells, preferably mammalian cells, transformed with the proteinaceous vector as defined above.
FIGURES
[0187] FIG. 1. Substitutions in the pore-forming and acylation domains synergize in decreasing the specific hemolytic activity of CyaA. (A) Sheep erythrocytes (5×108/ml) in TNC buffer were incubated with 5 μg/ml of enzymatically active CyaA proteins at 37° C. After 30 min, aliquots of cells suspensions were washed repeatedly to remove unbound CyaA and used to determine the amount of cell-associated and cell-invasive AC activity. Hemolytic activity was measured after 5 hours of incubation as the amount of released hemoglobin by photometric determination (A541). Activity of intact CyaA was taken as 100%. (B) Erythrocytes were incubated as above with the indicated concentrations of the enzymatically active CyaA-derived proteins for 30 min, washed, and the amount of cell-associated AC enzyme activity was determined. (C) The reduced cell binding activity of proteins with the K860R substitution was compensated for by increasing their concentration from 5 μg/ml to 25 μg/ml. Activities of CyaA/233OVA (CyaA/OVA) in the presence were taken as 100% value. The results represent average values from at least three independent experiments performed in duplicates. The asterisks indicate statistically significant differences (**, p<0.001) from activities of CyaA (FIG. 1A) or CyaA/OVA (FIG. 1C).
[0188] FIG. 2. CyaA/OVA/E570Q+K860R binds and translocates into CD11b+ monocytes. (A) J774A.1 cells (106/ml) were incubated in D-MEM for 30 min at 4° C. with 2.5 μg/ml of CyaA, washed repeatedly, and the amount of cell-associated AC activity was determined in cell lyzates. To block the CD11b/CD18 receptor, cells were incubated for 30 min with the CD11b-specific antibody M1/70 (Exbio, Czech Republic) at a final concentration of 10 μg/ml prior to addition of CyaA (**, p<0.001). (B) The AC domain translocation capacity of constructs was assessed as the capacity to penetrate cells and convert cytosolic ATP to cAMP. J774A.1 cells were incubated with CyaA constructs for 30 minutes at 37° C. and the amounts of cAMP accumulated in cell lyzates were determined (41). As a control, the CD11b/CD18 receptor was blocked with the anti-CD11b antibody M1/70 as above. Membrane penetration of CD11b/CD18-bound and endocytosed toxin was controlled by using the doubly mutated CyaA/E570K+E581P variant, which is intact for receptor binding but fails to translocate the AC domain across cell membrane and elevate cytosolic cAMP concentrations (Vojtova-Vodolanova et al., 2009). (C) J774A.1 cells were loaded with the K+ sensitive fluorescent probe PBFI/AM at 9.5 μM final external concentration and 25° C. for 45 min in the presence of Pluronic F-127 [0.05% (w/w)]. Cells were washed in HBSS before 3 μg ml-1 of the indicated toxins were added. Fluorescence intensity ratio of PBFI (excitation wavelength 340, emission wavelengths 450 and 510 nm) reflecting the intracellular K+ concentration was recorded every 15 s. The right scale shows intracellular [K+] values derived from calibration experiments (see Experimental procedures). No cell lysis, assessed as lactate dehydrogenase release, was observed within the time interval of the assay. Results representative of three independent determinations performed in duplicates are shown.
[0189] FIG. 3. E570Q+K860R toxoid does not permeabilize J774A.1 cells. (A) Lysis of J774A.1 cells was determined as the amount of lactate dehydrogenase released from 105 cells upon 3 h of incubation with 3, 10 and 30 μg ml-1 of the indicated protein at 37% in DMEM without serum. The results represent the average of values obtained in two experiments performed in duplicates. (B) Whole-cell patch-clamp measurements were performed on single J774A.1 cells at room temperature exposed to 1 or 10 μg/ml of CyaA/233OVA/AC- or CyaA/233OVA/E570Q+K860R/AC- proteins as described in Materials and Methods. The shown curves are representative of six determinations in 3 independent experiments.
[0190] FIG. 4. Toxoid with E570Q+K860R substitutions delivers the OVA T-cell epitope for presentation by MHC class I molecules and induction of CD8+ CTLs. (A) BMDC (3×105 cells/well) used as APCs were incubated in the presence of indicated concentrations (0 to 60 nM) of the toxoids harboring the OVA epitope or with mock CyaA/AC-. Upon co-culture for 24 hours with B3Z T cells (1×105 cells/well), IL-2 secretion by the stimulated B3Z cells was determined by the CTLL proliferation method. Results are expressed as Δcpm of incorporated [3H]thymidine (cpm in the presence of toxoid-cpm in the absence of toxoid)±SD and are representative of five independent experiments. (B) Analysis of the induction of OVA (SIINFEKL)-specific CTL responses by in vivo killing assay. On day 0, mice received 50 μg i.v. of mock AC- or OVA/AC- toxoids and on day 7, they were i.v. injected with a mixture (1:1) of OVA (SIINFEKL) peptide-loaded CFSEhigh and unloaded CFSElow splenocytes. The number of CFSE-positive cells remaining in the spleen after 20 h was determined by FACS analysis, as documented for one representative in vivo killing assay in the upper panel assembly of plots, where percentages of cells in the gates are indicated. The lower panel shows pooled results of in vivo killing assays for three independent experiments. Statistical significance was determined by the Student t test (p=0.75 for OVA/AC- vs. OVA/E570Q+K860R/AC-).
[0191] FIG. 5. Model of CyaA action on the membrane. (A) The model predicts an equilibrium between two conformers of CyaA in solution, each of them inserting into cell membrane in different a conformation. One would yield a monomeric CyaA translocation precursor, delivery of the AC domain into cytosol and concomitant influx of calcium ions into cells. The conformer would insert as pore precursor oligomerizing into a CyaA pore. (B) The synergic effect of the E570Q and K860R substitutions would selectively block the capacity of CyaA pore precursors to oligomerize into a pore, while the capacity of translocation precursors to deliver the AC domain across membrane would remain unaffected.
[0192] FIG. 6. Amino acid sequence of the Bordetella pertussis CyaA toxin (SEQ ID No 1)
[0193] FIG. 7. Amino acid sequence of the Bordetella pertussis CyaA/E570Q+K860R mutant (SEQ ID No 2)
[0194] FIG. 8. Amino acid sequence of the Bordetella pertussis CyaA/E570Q+K860R/AC- mutant (SEQ ID No 3)
[0195] FIG. 9. Amino acid sequence of the Bordetella pertussis CyaA/233OVA/E570Q+K860R/AC- mutant (SEQ ID No 4)
[0196] FIG. 10. Plasmid encoding the CyaA/E570Q+K860R/AC- mutant (QR-AC-).
[0197] FIG. 11. DNA sequence of the QR-AC- plasmid encoding the CyaA/E570Q+K860R/AC- mutant (SEQ ID No 5)
[0198] FIG. 12. Plasmid encoding the CyaA/233OVA/E570Q+K860R/ACmutant (OVA-QR-AC-).
[0199] FIG. 13. DNA sequence of OVA-QR-AC- plasmid encoding the CyaA/233OVA/E570Q+K860R/AC- mutant (SEQ ID No 6)
[0200] FIG. 14. Amino acid sequence of the Bordetella parapertussis CyaA toxin (accession number CAB76450, SEQ ID No 7)
[0201] FIG. 15. Amino acid sequence of the Bordetella hinzii CyaA toxin (accession number AAY57201, SEQ ID No 8)
[0202] FIG. 16. Amino acid sequence of the Bordetella bronchiseptica CyaA toxin (accession number CAA85481, SEQ ID No 9)
EXAMPLES
Adenylate Cyclase Toxin Translocates Across Target Cell Membrane without Forming a Pore
[0203] Materials and Methods
[0204] Construction, Production and Purification of CyaA Proteins.
[0205] The modifications yielding CyaNAC-, CyaA/233OVA, CyaA/E570Q and CyaA/K860R constructs were previously described (13, 20, 21) and were introduced into CyaA/233OVA/AC- individually or in combination. The CyaA-derived proteins were produced in E. coli XL-1 Blue and purified close to homogeneity as previously described (29). During the hydrophobic chromatography, the resin with bound toxin was repeatedly washed with 60% isopropanol (30) to reduce the endotoxin content of CyaA samples below 100 IU/mg of protein, as determined by the LAL assay QCL-1000 (Cambrex).
[0206] An Escherichia coli XL1-Blue strain (Stratagene) containing the QR-AC- plasmid (FIG. 10) which encodes the CyaA/E570Q+K860R/ACmutant was deposited on Mar. 18, 2009 at the CNCM (Collection Nationale de Cultures de Microorganismes, France) under the accession number CNCM 1-4136 (FIG. 10). The DNA sequence of the QR-AC- plasmid (SEQ ID No 5) is disclosed in FIG. 11.
[0207] An Escherichia coli XL1-Blue strain (Stratagene) containing the OVA-QR-AC- plasmid (FIG. 12) which encodes the CyaA/233OVA/E570Q+K860R/AC- mutant was deposited on Mar. 18, 2009 at the CNCM (Collection Nationale de Cultures de Microorganismes, France) under the accession number CNCM 1-4137. The DNA sequence of the OVA-QR-AC- plasmid (SEQ ID No 6) is disclosed in FIG. 13.
[0208] Cell Binding and Hemolytic Activities on Sheep Erythrocytes.
[0209] 5×108 washed sheep erythrocytes in 50 mM Tris pH 7.4, 150 mM NaCl and 2 mM CaCl2 (TNC buffer) were incubated at 37° C. with 5 μg/ml of CyaA proteins and cell binding, cell-invasive AC and hemolytic activities of CyaA were determined as described in detail previously (13). Significance of differences in activity values was analyzed using a one-way analysis of variance (ANOVA) with Bonferroni post-test (SigmaStat v. 3.11, Systat, San Jose, Calif.).
[0210] Macrophage Binding, Elevation of cAMP and Cell Lysis Capacities of CyaA.
[0211] J774.AI murine monocytes/macrophages (ATCC, number TIB-67) were cultured at 37° C. in a humidified air/CO2 (19:1) atmosphere in RPMI medium supplemented with 10% (v/v) heat-inactivated fetal bovine serum, penicillin (100 IU ml-1), streptomycin (100 μg ml-1) and amphotericin B (250 ng ml-1). Prior to assays, RPMI was replaced with Dulbecco's modified Eagle's medium (DMEM) (1.9 mM Ca2+) without FCS and the cells were allowed to rest in DMEM for 1 h at 37° C. in a humidified 5% CO2 atmosphere (8). J774A.1 macrophages (106) were incubated in D-MEM with 2.5 μg/ml of CyaA variants for 30 min at 4° C., prior to removal of unbound toxin by three washes in D-MEM. Cells were lyzed with 0.1% Triton X-100 for determination of cell-bound AC activity. For intracellular cAMP assays, 105 cells were incubated with CyaA for 30 minutes in D-MEM with 100 μM IBMX (3-isobutyl-1-methylxanthin), the reaction was stopped by addition of 0.2% Tween-20 in 100 mM HCl, samples were boiled for 15 min at 100° C., neutralized by addition of 150 mM unbuffered imidazol and cAMP was measured as described (29). To block the CD11b/CD18 receptor, cells were preincubated for 30 min on ice with the CD11b-specific blocking MAb M1/70 (Exbio, Czech Republic) at a final concentration of 10 μg/ml prior to addition of CyaA. Toxin-induced lysis of J774A.1 cells was determined using the CytoTox 96 kit assay (Promega) as the amount of lactate dehydrogenase released from 105 cells in 3 hours of incubation with 10 μg/ml of the appropriate protein at 37° C. in D-MEM as described (8). Significance of differences in activity values was analyzed as above.
[0212] Patch Clamp Measurements.
[0213] Whole-cell patch-clamp measurements were performed on J774A.1 cells bathing in HBSS (140 mM NaCl, 5 mM KCl, 2 mM CaCl2, 3 mM MgCl2, 10 mM Hepes-Na, 50 mM glucose; pH 7.4). Fire-polished glass micropipettes with outer diameter of about 3 μm were filled with a solution of 125 mM potassium gluconate, 15 mM KCl, 0.5 mM CaCl2, 1 mM MgCl2, 5 mM EGTA, 10 mM HEPES-KOH pH 7.2. The resulting resistances of the microelectrodes were 3 to 5 MΩ Cells were clamped at -40 mV, the data were filtered at 1 kHz and digitized at 2 kHz using Axopatch 200A amplifier, Digidata 1320A digitizer and PClamp-9 software package (Axon Instruments, Foster City, Calif.).
[0214] Determination of Decrease of Cytosolic K+ Concentration.
[0215] Cells grown on grass coverslips were washed in HBSS and loaded with 9.5 μM PFBI acetoxymethyl ester (PBFI/AM, Molecular Probes, Eugene, Oreg., USA) for 30 min at 25° C. in the presence of 0.05% (w/w) Pluronic F-127 (Sigma, St. Louis, Mo.), in the dark. Ratiometric measurement was performed at 25° C. using a FluoroMax-3 spectrofluorimeter (Jobin Yvon Horriba, France) equipped with DataMax software. Fluorescence intensity of PBFI (excitation wavelength 340, emission wavelengths 450 and 510 nm) was recorded every 15 s and the integration time for each wavelength was 3 s. The ratio of 450/510 nm wavelengths is shown. The observed area of coverslip mounted in the 1 cm cuvette was about 10 mm2, corresponding to approximately 104 cells. Calibration experiments were performed in 50 mM HEPES, pH 7.2, with varying concentrations of Potassium Acetate (10, 30, 60 or 140 mM) and Sodium Acetate (135, 115, 85 or 5 mM), respectively, on cells permeabilized for 30 min with 3 pM valinomycin or nigericin. Final intensity ratio (450/510 nm) is shown on right vertical axis of the plots.
[0216] Mice and Cell Lines.
[0217] Female C57BL/6 obtained from Charles River Laboratories were kept under specific pathogen-free conditions and manipulated according to institutional guidelines. CTLL-2 cells were obtained from ATCC. B3Z, a CD8+ specific T cell hybridoma specific for the Kb restricted OVA (SIINFEKL) epitope, was provided by N. Shastri (University of California, Berkeley) and maintained in the presence of 1 mg/ml G418 and 400 μg/ml hygromycin B in complete RPMI 1640 medium (Invitrogen Life Technologies) with 10% heat-inactivated FCS, 100 U/ml penicillin, 100 μg/ml streptomycin, and 5×10-5 M 2-ME.
[0218] Antigen Presentation Studies.
[0219] Bone Marrow Dendritic Cells (BMDC, 3×105 per well) used as APCs were incubated in the presence of various concentrations (0 to 60 nM) of the recombinant CyaA/OVA/AC- carrying the OVA (SIINFEKL) epitope or mock CyaNAC- and cocultured for 24 hours with B3Z T cells (1×105 per well), selectively recognizing the OVA SIINFEKL/H-2Kb MHC class I complexes. After 18 h of culture, supernatants were frozen for at least 2 h at -80° C. The amount of IL-2 produced by the stimulated B3Z cells was then determined by the CTLL proliferation method. Briefly, 104 cells of the IL-2-dependent CTLL line per well were cultured with 100 μl of supernatant in 200 μl of final volume. Twenty-four hours later, [3H]-thymidine (50 μCi/well) was added and cells were harvested 6 h later with an automated cell harvester. Incorporated [3H]-thymidine was detected by scintillation counting. Each point was done in duplicate and the experiment was repeated five times. Results are expressed in Δcpm of incorporated [3H]-thymidine (cpm in the presence of toxoid-cpm in the absence of toxoid).
[0220] In Vivo Killing Assay.
[0221] For CTL priming, mice were immunized by i.v. injection with 50 μg of recombinant CyaA/OVA/AC- carrying the OVA (SIINFEKL) epitope or mock CyaNAC-. Seven days after immunization, naive syngeneic splenocytes were pulsed with OVA (SIINFEKL) peptide (10 μg/ml) (30 min, 37° C.), washed extensively and labeled with a high concentration (1.25 μM) of carboxyfluoroscein succinimidyl ester (CFSE; Molecular Probes, Eugene, Oreg.). The nonpulsed control population was labeled with a low concentration (0.125 μM) of CFSE. CFSEhigh- and CFSElow-labeled cells were mixed in a 1:1 ratio (5×106 cells of each population) and injected i.v. into mice. Spleen cells were collected 20 h after, washed and resuspended in FACS buffer (PBS supplemented with 1% BSA and 0.1% NaN3). The number of CFSE-positive cells remaining in the spleen after 20 h was determined by FACS. The percentage of specific lysis was calculated as follows: percent specific lysis=100-[100×(% CFSEhigh immunized mice/% CFSElow immunized mice)/(% CFSEhigh naive mouse/% CFSElow naive mouse)].
[0222] Statistical Analysis:
[0223] Significance of differences in values was analyzed using a one-way analysis of variance (ANOVA) with Bonferroni post-test (SigmaStat v. 3.11, Systat, San Jose, Calif.).
[0224] Results
[0225] Combined Elimination of Negatively Charged Glutamate 570 and of Acylated Lysine 860 Ablates Cell-Permeabilizing Capacity of CyaA.
[0226] The working model of CyaA action predicts that CyaA can be modified to lose its pore-forming (hemolytic) activity while preserving the capacity to deliver the AC domain into cytosol of target cells. To test this hypothesis, the inventors sought to produce CyaA constructs exhibiting as low hemolytic and cytolytic activities as possible, building on previous observation that the capacity of CyaA/ACtoxoids to lyze cells can be modulated both up or down by substitutions within the pore-forming domain (8, 12-14, 18). To enable assessment of target cell penetration also for the CyaA/AC- toxoids, the inventors derived such mutants from a CyaA/233OVA toxin that was previously tagged by insertion of the SIINFEKL peptide from ovalbumin (OVA). This CyaA variant was chosen as the insertion of reporter Kb-restricted CD8+ T-cell epitope at residue 233 does not affect the AC activity and allows to quantify translocation of the OVA/AC enzyme into cells as elevation of cytosolic cAMP. More importantly, presence of the OVA epitope allows to assess also the capacity of enzymatically inactive CyaA/233OVA/AC- toxoids to deliver their OVA/AC- domain into cytosol of CD11b+ antigen presenting cells (APC), as this enables proteasome processing and cell surface presentation of the OVA epitope on MHC Class I glycoproteins that can be determined as stimulation of OVA-specific CD8+ T cells, both in vitro and in vivo (20).
[0227] To generate CyaA/AC- toxoids possibly lacking the cytolytic activity, the inventors combined the E570Q and K860R substitutions previously shown to reduce the specific hemolytic activity of CyaA on sheep erythrocytes, with the E570Q substitution having been found to reduce also the cytolytic activity of the CyaA/AC- on CD11b+ J774A.1 monocytes (8, 13). These substitutions were engineered into CyaA/233OVA/AC- individually and in combination and the specific hemolytic and cytolytic activities of resulting toxoids were compared using sheep erythrocytes as model CD11b- target and J774A.1 as model CD11b+ target in parallel (Table I). In agreement with results obtained previously with toxoids lacking the OVA epitope (4, 8, 13, 21), under the used conditions the OVA/AC- toxoids carrying individually the E570Q and K860R substitutions exhibited respectively a two-fold reduced (55±8) and nil (1±1) relative hemolytic activity on erythrocytes and the relative cytolytic activity of the E570Q toxoid towards CD11b-expressing J774A.1 cells was also reduced (37±10), as compared to OVA/AC-. In turn, as expected from results obtained with an enzymatically active K860R construct, despite the low hemolytic activity on CD11b- erythrocytes, the K860R toxoid exhibited only a slightly reduced relative cytolytic activity on CD11b+ J774A.1 cells (72±22%), confirming that the structural defect caused by the K860R substitution was rescued by interaction with the CD11b/CD18 receptor (4). Nevertheless, when combined with E570Q, the K860R substitution exhibited a clear synergic effect in reducing the relative cytolytic activity of the E570Q+K860R construct towards J774A.1 cells down to 14±7%.
TABLE-US-00001 TABLE I Cytolytic activities of OVA/AC- and derivatives on sheep erythrocytes and J774A.1 macrophages. Lysis of Lysis of erythrocytes J774A.1 cells Protein (% of AC-)a (% of AC-)b AC- 100 ± 5 100 ± 10 OVA/AC- 93 ± 4 93 ± 12 OVA/E570Q/AC- 55 ± 8** 37 ± 10** OVA/K860R/AC- 1 ± 1** 72 ± 22** OVA-L247Q-AC- 97 ± 3 41 ± 9 OVA/E570Q+K860R/AC- 1 ± 1** 14 ± 7** OVA-E570Q-L247Q-AC- 50 ± 12 40 ± 11 OVA-K860R-L247Q-AC- 1 ± 1 45 ± 11 OVA-E570Q-K860R-L247Q-AC- 0 ± 1 16 ± 10 Table Legend aLysis of sheep erythrocytes was determined after 4.5 hours as the amount of hemoglobin released upon incubation of 5 × 108 RBC at 37° C. in the presence of 2 mM Ca2+ with 5 μg/ml of the given protein (31). The hemolytic activity of CyaA/AC- was taken as 100% activity. The results represent the average of values obtained in four independent experiments performed in duplicates ± S.D with two different protein preparations. bLysis of J774A.1 cells was determined as the amount of released lactate dehydrogenase from 105 cells upon 3 hours of cell incubation with 10 μg/ml of the appropriate protein at 37° C. in D-MEM. J774A.1 cell lysis by CyaA/AC- was taken as 100%. The results represent the average of values obtained in four separate experiments performed in duplicates ± S.D with two different protein preparations (*p < 0.05; **p < 0.001).
[0228] To enable quantification of capacity of the E570Q+K860R construct to deliver the AC domain into cytosol of cells, the E570Q and K860R substitutions were transferred into enzymatically active constructs derived from CyaA/233OVA (CyaA/OVA). These were produced and purified in the same way as the AC- toxoids (not shown) and characterized for cell binding, hemolytic and AC translocation capacities on sheep erythrocytes. As shown in FIG. 1A and expected from results with toxins lacking the OVA epitope (4, 13, 21), the E570Q substitution had no impact on erythrocyte binding or the capacity of CyaA/OVA to deliver the AC domain into erythrocyte cytosol and selectively reduced only its relative hemolytic activity. As further expected (4), the K860R substitution significantly reduced the capacity of CyaA/OVA to bind and penetrate erythrocytes, causing a sharp reduction of the relative hemolytic and cell-invasive AC activities of the E570Q and E570Q+K860R mutants on erythrocytes.
[0229] It has to be noted, that the hemolytic activity of CyaA is a highly cooperative function of the amount of cell-associated CyaA (Hill number >3), suggesting that CyaA oligomerization is a prerequisite for pore formation (22). Therefore, to assess the impact of combined E570Q+K860R substitutions on the hemolytic activity, the loss of erythrocyte-binding capacity of the K860R constructs had to be compensated by increasing their concentration in the assay to 25 μg/ml (5 μg/ml for intact toxin), in order to achieve binding of equal amounts of all proteins to erythrocytes, as shown in FIG. 1G. Under these conditions the combination of E5700 and K860R substitutions exhibited a clear synergy in further reducing by a factor of two the already impaired hemolytic activities of constructs carrying the E5700 (˜50%) and K860R substitutions (˜30%) individually, as shown in FIG. 2C. This suggests that combination of the two substitutions affected the specific cell-permeabilizing capacity of CyaA.
[0230] Pore-Forming Activity of CyaA is Dispensable for Membrane Translocation of the AC Domain.
[0231] In contrast to impact of the K860R substitution on toxin activity on erythrocytes, both the E570Q and K860R substitutions were previously found to have no effect on the capacity of CyaA to bind and penetrate J774A.1 monocytes expressing the CD11b/CD18 receptor (4, 8). Moreover, as documented in FIG. 2, when the two substitutions were combined in the same toxin molecule, the CyaA/OVA/E570Q+K860R construct exhibited an equal capacity to bind J774A.1 cells (FIG. 2A) and to deliver the AC domain into their cytosol to elevate cytosolic cAMP concentrations (FIG. 2B), as did intact CyaA. At the same time, however, the doubly mutated E570Q+K860R toxoid exhibited an about seven-fold reduced (14±7%) relative cytolytic capacity on these cells (cf. Table I). As shown in FIG. 2C, when compared with intact CyaA, the singly mutated E570Q and the doubly mutated E570Q+K860R constructs were importantly impaired in the capacity to elicit decrease of intracellular concentration of potassium ions ([K+]i) in toxin-treated J774A.1 cells. While no cell lysis was detected over 20 min by the assay for release of lactate dehydrogenase, the [K+]i of J774A.1 cells exposed to 3 μg ml-1 of intact CyaA decreased from 140 mM to well below 30 mM already in 10 min upon toxin addition. In turn, when the same amounts of the ER570QiK860R constructs were used (3 μg ml-1), the [K+]i levels in cells did not decrease below 100 mM (FIG. 2C). Indeed, efflux of potassium from cells was previously shown to be the hallmark of insertion of the CyaA pore precursors into cell membrane (32). This suggested that the combination of E570Q and K860R substitutions selectively impaired only the capacity of the toxoid to permeabilize J774A.1 cells and not its capacity to translocate the AC domain across cell membrane.
[0232] This conclusion was further supported by an importantly reduced relative cytolytic activity of the corresponding E570Q/AC- and E570Q+K860R/AC- toxoids, as discussed above (Table I) and documented in detail in FIG. 3A. The doubly mutated E570Q+K860R toxoid at 3 μg ml-1 was essentially unable to provoke any detectable release of lactate dehydrogenase from J774A.1 cells in 3 h of incubation, while 20% of cells lysed in the presence of equal amounts of intact toxoid.
[0233] To test this, the inventors analyzed the cell-permeabilizing capacity of the E570Q+K860R construct in single whole cell patch-clamp experiments. Here again the AC- toxoids had to be used, in order to avoid the massive ruffling of J774A.1 cells provoked by toxin-generated cAMP (23). As shown in FIG. 3A by a representative recording of ion currents across the membrane of patch-clamped single J774A.1 cells exposed to 1 μg/ml of CyaA/OVA/AC-, upon an initial lag of about 3 minutes the J774A.1 cells were progressively and massively permeabilized by CyaA/OVA/AC- and the currents across cell membrane reached -3,000 pA within 10 minutes. In contrast, as shown in FIG. 3B, exposure to the CyaA/OVA/E570Q+K860R/AC- reproducibly caused only a transient and minimal initial permeabilization of the cells, with currents across cell membrane not exceeding -200 pA and returning close to zero within 10 minutes after toxoid addition. Quite similar picture was observed when toxoid concentrations were elevated to 10 μg ml-1, which was the concentration used for comparisons of relative cytolytic activity of toxoids summarized in Table I. The 10-fold increase of concentration from 1 to 10 μg ml-1 resulted in about twofold increase of the currents produced across cell membrane by OVA/AC-, while essentially no enhancement of cell permeabilization was observed even at the increased concentration of OVA/E570Q+K860R/AC- (note the expanded scale of y-axis for measurements at 10 μg ml-1). The shown recordings were representative of at least six determinations from 3 independent experiments and demonstrate that the combination of the E570Q and K860R substitutions had a major impact on the capacity of the toxoid to permeabilize the membrane of J774A.1 cells. Given that the enzymatically active version of the same construct was fully capable to translocate the AC domain into J774A.1 cells (cf. FIG. 2B), these results strongly suggest that the cell-permeabilizing (pore-forming) activity of CyaA was not required for AC domain translocation across cellular membrane.
[0234] Membrane-Permeabilizing Activity of CyaA is Dispensable for Delivery of Passenger Antigens to the Cytosolic MHC Class I Pathway.
[0235] Since the assay for cytosolic cAMP could not be used for assessment of cell penetration capacity of the AC- toxoids, the surrogate assay for their capacity to deliver the reporter OVA epitope to the cytosolic processing site of the MHC class I antigen presentation pathway was used (7, 24). Towards this end, the inventors determined the capacity of C57BL/6 mouse bone marrow-derived dendritic cells (BMDCs), loaded with the toxoids, to stimulate IL-2 release by B3Z T cells that selectively recognize the complex of Kb MHC class I molecules with the SIINFEKL (OVA) peptide on APCs. It has, indeed, been previously shown that the capacity of CyaA/AC- toxoids to translocate the AC domain across the cytoplasmic membrane into cytosol of BMDCs is essential for the capacity of the toxoids to promote presentation of the delivered OVA epitope in complex with the H-2Kb MHC class I molecules. This, in turn, is essential for specific in vitro stimulation of cytotoxic T cells to occur (29). Nevertheless, it was important to confirm here that delivery of the OVA epitope for proteasome processing and subsequent presentation was due to AC domain translocation into cytosol of BMDCs across their cytoplasmic membrane, and was not due to sampling of the added antigen by fluid phase uptake, or endocytosis. For this purpose, a doubly mutated non-translocating OVA/E570K+E581 P/AC- toxoid variant was used, which bears a combination of charge-reversing and a-helix-breaking substitutions of glutamates 570 and 581 in the transmembrane domain of CyaA (33). This construct was previously found to exhibit a full capacity to bind CD11b/CD18-expressing cells (cf. FIG. 2A), while its capacity to translocate the AC domain across target cell membrane was ablated by the combination of E570K and E581P substitutions (cf. FIG. 2B).
[0236] As shown in FIG. 4A, the B3Z hybridoma cells were effectively stimulated upon co-incubation with BMDCs loaded with the OVA/E570Q/AC- and OVA/E570Q+K860R/AC- toxoids. In contrast, no B3Z stimulation was observed upon co-incubation with BMDCs loaded with the OVA/E570K+E581P/AC- toxoid defective in AC domain translocation across cell membrane. Moreover, the OVA/E570Q/AC- and OVA/E570Q+K860R/AC- toxoids induced stimulation of the B3Z lymphocytes by APCs in vitro with as high efficiency as intact OVA/AC- toxoid. These results confirm that the E570Q+K860R double mutant was fully capable to translocate its AC domain into BMDC cytosol for processing and presentation of the OVA epitope by Kb MHC class I molecules, while being essentially unable to permeabilize the J774A.1 cells. These results suggest that the cell-permeabilizing (pore-forming) activity of CyaA was neither required for AC domain translocation across cellular membrane, nor did it play any role in the capacity of CyaA to deliver passenger epitopes into APC cytosol.
[0237] To corroborate the observed in vitro antigen delivery capacity of the non-cytolytic toxoids, the inventors assessed their in vivo capacity to prime OVA-specific cytotoxic CD8+ T lymphocytes (CTL). 50 μg of the various OVA-toxoids were injected intravenously into C57BL/6 mice and one week later the OVA-specific CTL responses were assessed in immunized mice by an in vivo killing assay. C57BL/6 mice received i.v. injection of a mixture (1:1) of OVA (SIINFEKL) peptide-loaded CFSEhigh and unloaded CFSElow splenocytes, followed one day later by FACS analysis of CFSE-labeled cells. As shown in FIG. 4B, immunization of mice with the mock toxoid did not induce any SIINFEKL-specific in vivo CTL activity. In turn, immunization with the E570Q+K860R toxoid induced the same OVA-specific in vivo CTL killing response as the unmutated toxoid used as positive control, with the slight difference in the values of mean response to the intact and doubly mutated toxoids not being statistically significant (p=0.065). These results show that the cell-permeabilizing activity of CyaA was dispensable for the in vivo capacity of the CyaA/233OVA/AC- toxoids to deliver an AC-inserted passenger antigen into cytosol of APCs.
DISCUSSION
[0238] The inventors demonstrate here that translocation of the AC domain of CyaA across the membrane of CD11b/CD18 receptor-expressing myeloid target cells does not depend on the capacity of the toxin to form pores and permeabilize the cellular membrane.
[0239] As summarized in the model proposed in FIG. 5, the inventors have previously reported that balance between the two activities of CyaA can be shifted by mutations or alternative acylation of CyaA. Enhancement of the pore-forming (hemolytic) activity at the expense of the capacity to deliver AC into cells was, indeed, observed upon lysine substitutions of glutamates 509, 516 and 581 (13, 18), or upon blocking of AC translocation by the 3D1 monoclonal antibody (MAb) (25). In turn, a shift in the opposite direction was observed for the recombinant r-Ec-CyaA, acylated in E. coli by palmitoleyl (C16:1) residues, as compared to the native (C16:0) palmitoylated Bp-CyaA produced by B. pertussis. The r-Ec-CyaA was found to exhibit about four-fold reduced hemolytic activity and about ten-fold lower pore-forming activity in planar lipid bilayers than Bp-CyaA (12), while both CyaA forms were equally active in penetrating cellular membrane and translocating the AC domain into erythrocytes (17, 26). Moreover, recently the CyaA/E570Q construct was found to exhibit a full capacity to deliver the AC domain into both erythrocytes and J774A.1 macrophages, while exhibiting reduced hemolytic activity and lower specific pore-forming capacity in planar lipid bilayers than intact CyaA, with the CyaA/E570Q/AC- toxoid exhibiting a two-fold reduced cytolytic activity on J774A.1 cells (8, 13).
[0240] Despite the above mentioned and the many mutant CyaAs that the inventors characterized, the question remained whether formation of a membrane pore by CyaA is required for translocation of the AC domain across the membrane of CD11b-expressing cells. It is worth mentioning that, based on previous comparisons of haemolytic potency of the intact r-Ec-CyaA with that of the native Bp-CyaA purified from B. pertussis, the specific haemolytic activity of the here described r-Ec-CyaA/OVA/E570Q+K860R/AC- toxoid on sheep erythrocytes would be reduced by about three orders of magnitude. The residual specific cytolytic activity of r-Ec-CyaA/OVA/E570Q+K860R/AC- on CD11b-expressing cells would then be estimated to be about 50-fold lower than that of Bp-CyaA, while the specific capacity of both proteins to deliver the AC domain into these cells would be the same (using intact r-Ec-CyaA as 100% invasive AC activity standard for comparisons). The here described CyaA/233OVA/E570Q+K860R mutant is the first construct with an importantly reduced capacity to permeabilize cells that remains fully capable of translocating the AC domain across cellular membrane. This shows that on its way to cell cytosol the translocating AC domain can bypass the cation-selective pore formed by CyaA.
[0241] The mode and path of AC domain translocation across cellular membrane, however, remain to be defined in more detail. Given the differing effects of substitutions of glutamates 509, 516, 570 and 581 on the pore-forming and AC delivery activities of CyaA (8, 13, 18), where the balance between the two activities can be almost entirely shifted in either direction by specific substitutions, the amphipathic helices harboring these glutamate residues appear to be involved in both activities of CyaA in an alternative manner. This is supported by the effect of combined E509K+E516K substitution, which yields a hyper-hemolytic CyaA unable to deliver the AC domain into cells (8, 18), while the here described E570Q+K860R combination yields the opposite, an essentially non-cytolytic CyaA that is fully competent to translocate the AC domain into J774A.1 cells (CD11b+).
[0242] These observations further corroborate the proposed model that the two membrane activities of CyaA would depend on different conformers inserting into membrane, one yielding translocation of the AC domain by toxin monomers and the other leading to formation of oligomeric CyaA pores (13, 18). It is proposed that the transmembrane segments harbouring the critical glutamate residues 509, 516, 570 and 581 can participate in formation of an oligomeric and cation-selective cytolytic pore only if the membrane-inserted pore precursor conformer has the AC domain located outside the cell. In the AC translocating conformer, the same transmembrane segments would adopt a different conformation in the membrane, being potentially obtruded and prevented from entering CyaA oligomers by the polypeptide linking the C-terminal end of the AC domain to transmembrane segments. Support for this interpretation can be deduced from results obtained by Gray and co-workers (25). These authors showed that deletion of the AC domain together with the segment linking it to the pore-forming domain (up to residue 489), or binding of the 3D1 antibody that blocks membrane translocation of the terminal AC domain segment located between residues 373 and 399, importantly enhances the pore-forming (haemolytic) activity of the toxin. This is likely to be due to imposing a conformation on the transmembrane segments of CyaA that is favourable for formation of the otigomeric pores. It remains to be defined what CyaA segments outside of the pore-forming domain are involved in AC domain translocation across membrane. Given the requirement for its structural integrity (27), the large RTX repeat domain (residues 1006 to 1706) is likely to be taking part in AC translocation into cells. It would be sized enough (700 residues) to form a hydrophilic translocation interface within cellular membrane that might allow passage of an unfolded AC domain across the membrane without a concomitant formation of a real cell-permeabilizing pore. Alternatively, CyaA might promote formation of inverted nonlamellar (inverted hexagonal phase) lipid structures (28), which might potentially take part in a well sealed protein-lipid interface through which the AC domain could slide into cell cytosol.
[0243] CyaA was, indeed, previously shown to promote formation of inverted non-lamellar (inverted hexagonal phase) lipid structures (28). These might potentially take part in formation of a well-sealed protein-lipid interface, thus allowing translocation of the AC domain across membrane in the absence of cell permeabilization. Formation of non-lamellar lipid structures is favoured in cholesterol-enriched lipid rafts and CyaA was, indeed, recently found to mobilize into rafts in complex with its receptor CD11b/CD18. Moreover, the inventors have recently shown that AC domain translocation across membrane is accomplished only upon relocation of CyaA into rafts (L., Bumba, J., Masin, R., Fiser, and P., Sebo, submitted). Intriguingly, translocation of the catalytic subunit of diphtheria toxin (DT) across the cell cytoplasmic membrane was also previously found to occur without detectable cell permeabilization, when DT was pulsed into cells by low pH upon binding to a truncated GPI-anchored DT receptor (34). The authors did not examine whether the GPI-anchored DT receptor localized into lipid rafts, but this is highly likely. It is, hence, tempting to speculate that the specific lipid composition of the raft membrane may support translocation of different protein toxins into target cells without the need for formation of a true protein conducting pore permeabilizing the cell.
[0244] Last not least, a practical discovery reported herein is that the CyaA/E570Q+K860R/AC- toxoid with the much reduced cell-permeabilizing (cytolytic) activity, remains fully active in antigen delivery into CD11b+ APCs. This is of importance in the light of its potential use as enhanced safety profile tool for delivery of tumor-specific antigens in second generation of CyaNAC--derived vaccines for immunotherapy of cancer.
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Sequence CWU
1
1
1211706PRTBordetella pertussis 1Met Gln Gln Ser His Gln Ala Gly Tyr Ala
Asn Ala Ala Asp Arg Glu 1 5 10
15 Ser Gly Ile Pro Ala Ala Val Leu Asp Gly Ile Lys Ala Val Ala
Lys 20 25 30 Glu
Lys Asn Ala Thr Leu Met Phe Arg Leu Val Asn Pro His Ser Thr 35
40 45 Ser Leu Ile Ala Glu Gly
Val Ala Thr Lys Gly Leu Gly Val His Ala 50 55
60 Lys Ser Ser Asp Trp Gly Leu Gln Ala Gly Tyr
Ile Pro Val Asn Pro 65 70 75
80 Asn Leu Ser Lys Leu Phe Gly Arg Ala Pro Glu Val Ile Ala Arg Ala
85 90 95 Asp Asn
Asp Val Asn Ser Ser Leu Ala His Gly His Thr Ala Val Asp 100
105 110 Leu Thr Leu Ser Lys Glu Arg
Leu Asp Tyr Leu Arg Gln Ala Gly Leu 115 120
125 Val Thr Gly Met Ala Asp Gly Val Val Ala Ser Asn
His Ala Gly Tyr 130 135 140
Glu Gln Phe Glu Phe Arg Val Lys Glu Thr Ser Asp Gly Arg Tyr Ala 145
150 155 160 Val Gln Tyr
Arg Arg Lys Gly Gly Asp Asp Phe Glu Ala Val Lys Val 165
170 175 Ile Gly Asn Ala Ala Gly Ile Pro
Leu Thr Ala Asp Ile Asp Met Phe 180 185
190 Ala Ile Met Pro His Leu Ser Asn Phe Arg Asp Ser Ala
Arg Ser Ser 195 200 205
Val Thr Ser Gly Asp Ser Val Thr Asp Tyr Leu Ala Arg Thr Arg Arg 210
215 220 Ala Ala Ser Glu
Ala Thr Gly Gly Leu Asp Arg Glu Arg Ile Asp Leu 225 230
235 240 Leu Trp Lys Ile Ala Arg Ala Gly Ala
Arg Ser Ala Val Gly Thr Glu 245 250
255 Ala Arg Arg Gln Phe Arg Tyr Asp Gly Asp Met Asn Ile Gly
Val Ile 260 265 270
Thr Asp Phe Glu Leu Glu Val Arg Asn Ala Leu Asn Arg Arg Ala His
275 280 285 Ala Val Gly Ala
Gln Asp Val Val Gln His Gly Thr Glu Gln Asn Asn 290
295 300 Pro Phe Pro Glu Ala Asp Glu Lys
Ile Phe Val Val Ser Ala Thr Gly 305 310
315 320 Glu Ser Gln Met Leu Thr Arg Gly Gln Leu Lys Glu
Tyr Ile Gly Gln 325 330
335 Gln Arg Gly Glu Gly Tyr Val Phe Tyr Glu Asn Arg Ala Tyr Gly Val
340 345 350 Ala Gly Lys
Ser Leu Phe Asp Asp Gly Leu Gly Ala Ala Pro Gly Val 355
360 365 Pro Ser Gly Arg Ser Lys Phe Ser
Pro Asp Val Leu Glu Thr Val Pro 370 375
380 Ala Ser Pro Gly Leu Arg Arg Pro Ser Leu Gly Ala Val
Glu Arg Gln 385 390 395
400 Asp Ser Gly Tyr Asp Ser Leu Asp Gly Val Gly Ser Arg Ser Phe Ser
405 410 415 Leu Gly Glu Val
Ser Asp Met Ala Ala Val Glu Ala Ala Glu Leu Glu 420
425 430 Met Thr Arg Gln Val Leu His Ala Gly
Ala Arg Gln Asp Asp Ala Glu 435 440
445 Pro Gly Val Ser Gly Ala Ser Ala His Trp Gly Gln Arg Ala
Leu Gln 450 455 460
Gly Ala Gln Ala Val Ala Ala Ala Gln Arg Leu Val His Ala Ile Ala 465
470 475 480 Leu Met Thr Gln Phe
Gly Arg Ala Gly Ser Thr Asn Thr Pro Gln Glu 485
490 495 Ala Ala Ser Leu Ser Ala Ala Val Phe Gly
Leu Gly Glu Ala Ser Ser 500 505
510 Ala Val Ala Glu Thr Val Ser Gly Phe Phe Arg Gly Ser Ser Arg
Trp 515 520 525 Ala
Gly Gly Phe Gly Val Ala Gly Gly Ala Met Ala Leu Gly Gly Gly 530
535 540 Ile Ala Ala Ala Val Gly
Ala Gly Met Ser Leu Thr Asp Asp Ala Pro 545 550
555 560 Ala Gly Gln Lys Ala Ala Ala Gly Ala Glu Ile
Ala Leu Gln Leu Thr 565 570
575 Gly Gly Thr Val Glu Leu Ala Ser Ser Ile Ala Leu Ala Leu Ala Ala
580 585 590 Ala Arg
Gly Val Thr Ser Gly Leu Gln Val Ala Gly Ala Ser Ala Gly 595
600 605 Ala Ala Ala Gly Ala Leu Ala
Ala Ala Leu Ser Pro Met Glu Ile Tyr 610 615
620 Gly Leu Val Gln Gln Ser His Tyr Ala Asp Gln Leu
Asp Lys Leu Ala 625 630 635
640 Gln Glu Ser Ser Ala Tyr Gly Tyr Glu Gly Asp Ala Leu Leu Ala Gln
645 650 655 Leu Tyr Arg
Asp Lys Thr Ala Ala Glu Gly Ala Val Ala Gly Val Ser 660
665 670 Ala Val Leu Ser Thr Val Gly Ala
Ala Val Ser Ile Ala Ala Ala Ala 675 680
685 Ser Val Val Gly Ala Pro Val Ala Val Val Thr Ser Leu
Leu Thr Gly 690 695 700
Ala Leu Asn Gly Ile Leu Arg Gly Val Gln Gln Pro Ile Ile Glu Lys 705
710 715 720 Leu Ala Asn Asp
Tyr Ala Arg Lys Ile Asp Glu Leu Gly Gly Pro Gln 725
730 735 Ala Tyr Phe Glu Lys Asn Leu Gln Ala
Arg His Glu Gln Leu Ala Asn 740 745
750 Ser Asp Gly Leu Arg Lys Met Leu Ala Asp Leu Gln Ala Gly
Trp Asn 755 760 765
Ala Ser Ser Val Ile Gly Val Gln Thr Thr Glu Ile Ser Lys Ser Ala 770
775 780 Leu Glu Leu Ala Ala
Ile Thr Gly Asn Ala Asp Asn Leu Lys Ser Val 785 790
795 800 Asp Val Phe Val Asp Arg Phe Val Gln Gly
Glu Arg Val Ala Gly Gln 805 810
815 Pro Val Val Leu Asp Val Ala Ala Gly Gly Ile Asp Ile Ala Ser
Arg 820 825 830 Lys
Gly Glu Arg Pro Ala Leu Thr Phe Ile Thr Pro Leu Ala Ala Pro 835
840 845 Gly Glu Glu Gln Arg Arg
Arg Thr Lys Thr Gly Lys Ser Glu Phe Thr 850 855
860 Thr Phe Val Glu Ile Val Gly Lys Gln Asp Arg
Trp Arg Ile Arg Asp 865 870 875
880 Gly Ala Ala Asp Thr Thr Ile Asp Leu Ala Lys Val Val Ser Gln Leu
885 890 895 Val Asp
Ala Asn Gly Val Leu Lys His Ser Ile Lys Leu Asp Val Ile 900
905 910 Gly Gly Asp Gly Asp Asp Val
Val Leu Ala Asn Ala Ser Arg Ile His 915 920
925 Tyr Asp Gly Gly Ala Gly Thr Asn Thr Val Ser Tyr
Ala Ala Leu Gly 930 935 940
Arg Gln Asp Ser Ile Thr Val Ser Ala Asp Gly Glu Arg Phe Asn Val 945
950 955 960 Arg Lys Gln
Leu Asn Asn Ala Asn Val Tyr Arg Glu Gly Val Ala Thr 965
970 975 Gln Thr Thr Ala Tyr Gly Lys Arg
Thr Glu Asn Val Gln Tyr Arg His 980 985
990 Val Glu Leu Ala Arg Val Gly Gln Val Val Glu Val
Asp Thr Leu Glu 995 1000 1005
His Val Gln His Ile Ile Gly Gly Ala Gly Asn Asp Ser Ile Thr
1010 1015 1020 Gly Asn Ala
His Asp Asn Phe Leu Ala Gly Gly Ser Gly Asp Asp 1025
1030 1035 Arg Leu Asp Gly Gly Ala Gly Asn
Asp Thr Leu Val Gly Gly Glu 1040 1045
1050 Gly Gln Asn Thr Val Ile Gly Gly Ala Gly Asp Asp Val
Phe Leu 1055 1060 1065
Gln Asp Leu Gly Val Trp Ser Asn Gln Leu Asp Gly Gly Ala Gly 1070
1075 1080 Val Asp Thr Val Lys
Tyr Asn Val His Gln Pro Ser Glu Glu Arg 1085 1090
1095 Leu Glu Arg Met Gly Asp Thr Gly Ile His
Ala Asp Leu Gln Lys 1100 1105 1110
Gly Thr Val Glu Lys Trp Pro Ala Leu Asn Leu Phe Ser Val Asp
1115 1120 1125 His Val
Lys Asn Ile Glu Asn Leu His Gly Ser Arg Leu Asn Asp 1130
1135 1140 Arg Ile Ala Gly Asp Asp Gln
Asp Asn Glu Leu Trp Gly His Asp 1145 1150
1155 Gly Asn Asp Thr Ile Arg Gly Arg Gly Gly Asp Asp
Ile Leu Arg 1160 1165 1170
Gly Gly Leu Gly Leu Asp Thr Leu Tyr Gly Glu Asp Gly Asn Asp 1175
1180 1185 Ile Phe Leu Gln Asp
Asp Glu Thr Val Ser Asp Asp Ile Asp Gly 1190 1195
1200 Gly Ala Gly Leu Asp Thr Val Asp Tyr Ser
Ala Met Ile His Pro 1205 1210 1215
Gly Arg Ile Val Ala Pro His Glu Tyr Gly Phe Gly Ile Glu Ala
1220 1225 1230 Asp Leu
Ser Arg Glu Trp Val Arg Lys Ala Ser Ala Leu Gly Val 1235
1240 1245 Asp Tyr Tyr Asp Asn Val Arg
Asn Val Glu Asn Val Ile Gly Thr 1250 1255
1260 Ser Met Lys Asp Val Leu Ile Gly Asp Ala Gln Ala
Asn Thr Leu 1265 1270 1275
Met Gly Gln Gly Gly Asp Asp Thr Val Arg Gly Gly Asp Gly Asp 1280
1285 1290 Asp Leu Leu Phe Gly
Gly Asp Gly Asn Asp Met Leu Tyr Gly Asp 1295 1300
1305 Ala Gly Asn Asp Thr Leu Tyr Gly Gly Leu
Gly Asp Asp Thr Leu 1310 1315 1320
Glu Gly Gly Ala Gly Asn Asp Trp Phe Gly Gln Thr Gln Ala Arg
1325 1330 1335 Glu His
Asp Val Leu Arg Gly Gly Asp Gly Val Asp Thr Val Asp 1340
1345 1350 Tyr Ser Gln Thr Gly Ala His
Ala Gly Ile Ala Ala Gly Arg Ile 1355 1360
1365 Gly Leu Gly Ile Leu Ala Asp Leu Gly Ala Gly Arg
Val Asp Lys 1370 1375 1380
Leu Gly Glu Ala Gly Ser Ser Ala Tyr Asp Thr Val Ser Gly Ile 1385
1390 1395 Glu Asn Val Val Gly
Thr Glu Leu Ala Asp Arg Ile Thr Gly Asp 1400 1405
1410 Ala Gln Ala Asn Val Leu Arg Gly Ala Gly
Gly Ala Asp Val Leu 1415 1420 1425
Ala Gly Gly Glu Gly Asp Asp Val Leu Leu Gly Gly Asp Gly Asp
1430 1435 1440 Asp Gln
Leu Ser Gly Asp Ala Gly Arg Asp Arg Leu Tyr Gly Glu 1445
1450 1455 Ala Gly Asp Asp Trp Phe Phe
Gln Asp Ala Ala Asn Ala Gly Asn 1460 1465
1470 Leu Leu Asp Gly Gly Asp Gly Arg Asp Thr Val Asp
Phe Ser Gly 1475 1480 1485
Pro Gly Arg Gly Leu Asp Ala Gly Ala Lys Gly Val Phe Leu Ser 1490
1495 1500 Leu Gly Lys Gly Phe
Ala Ser Leu Met Asp Glu Pro Glu Thr Ser 1505 1510
1515 Asn Val Leu Arg Asn Ile Glu Asn Ala Val
Gly Ser Ala Arg Asp 1520 1525 1530
Asp Val Leu Ile Gly Asp Ala Gly Ala Asn Val Leu Asn Gly Leu
1535 1540 1545 Ala Gly
Asn Asp Val Leu Ser Gly Gly Ala Gly Asp Asp Val Leu 1550
1555 1560 Leu Gly Asp Glu Gly Ser Asp
Leu Leu Ser Gly Asp Ala Gly Asn 1565 1570
1575 Asp Asp Leu Phe Gly Gly Gln Gly Asp Asp Thr Tyr
Leu Phe Gly 1580 1585 1590
Val Gly Tyr Gly His Asp Thr Ile Tyr Glu Ser Gly Gly Gly His 1595
1600 1605 Asp Thr Ile Arg Ile
Asn Ala Gly Ala Asp Gln Leu Trp Phe Ala 1610 1615
1620 Arg Gln Gly Asn Asp Leu Glu Ile Arg Ile
Leu Gly Thr Asp Asp 1625 1630 1635
Ala Leu Thr Val His Asp Trp Tyr Arg Asp Ala Asp His Arg Val
1640 1645 1650 Glu Ile
Ile His Ala Ala Asn Gln Ala Val Asp Gln Ala Gly Ile 1655
1660 1665 Glu Lys Leu Val Glu Ala Met
Ala Gln Tyr Pro Asp Pro Gly Ala 1670 1675
1680 Ala Ala Ala Ala Pro Pro Ala Ala Arg Val Pro Asp
Thr Leu Met 1685 1690 1695
Gln Ser Leu Ala Val Asn Trp Arg 1700 1705
21706PRTArtificial SequenceDescription of Artificial Sequence Synthetic
polypeptide 2Met Gln Gln Ser His Gln Ala Gly Tyr Ala Asn Ala Ala Asp
Arg Glu 1 5 10 15
Ser Gly Ile Pro Ala Ala Val Leu Asp Gly Ile Lys Ala Val Ala Lys
20 25 30 Glu Lys Asn Ala Thr
Leu Met Phe Arg Leu Val Asn Pro His Ser Thr 35
40 45 Ser Leu Ile Ala Glu Gly Val Ala Thr
Lys Gly Leu Gly Val His Ala 50 55
60 Lys Ser Ser Asp Trp Gly Leu Gln Ala Gly Tyr Ile Pro
Val Asn Pro 65 70 75
80 Asn Leu Ser Lys Leu Phe Gly Arg Ala Pro Glu Val Ile Ala Arg Ala
85 90 95 Asp Asn Asp Val
Asn Ser Ser Leu Ala His Gly His Thr Ala Val Asp 100
105 110 Leu Thr Leu Ser Lys Glu Arg Leu Asp
Tyr Leu Arg Gln Ala Gly Leu 115 120
125 Val Thr Gly Met Ala Asp Gly Val Val Ala Ser Asn His Ala
Gly Tyr 130 135 140
Glu Gln Phe Glu Phe Arg Val Lys Glu Thr Ser Asp Gly Arg Tyr Ala 145
150 155 160 Val Gln Tyr Arg Arg
Lys Gly Gly Asp Asp Phe Glu Ala Val Lys Val 165
170 175 Ile Gly Asn Ala Ala Gly Ile Pro Leu Thr
Ala Asp Ile Asp Met Phe 180 185
190 Ala Ile Met Pro His Leu Ser Asn Phe Arg Asp Ser Ala Arg Ser
Ser 195 200 205 Val
Thr Ser Gly Asp Ser Val Thr Asp Tyr Leu Ala Arg Thr Arg Arg 210
215 220 Ala Ala Ser Glu Ala Thr
Gly Gly Leu Asp Arg Glu Arg Ile Asp Leu 225 230
235 240 Leu Trp Lys Ile Ala Arg Ala Gly Ala Arg Ser
Ala Val Gly Thr Glu 245 250
255 Ala Arg Arg Gln Phe Arg Tyr Asp Gly Asp Met Asn Ile Gly Val Ile
260 265 270 Thr Asp
Phe Glu Leu Glu Val Arg Asn Ala Leu Asn Arg Arg Ala His 275
280 285 Ala Val Gly Ala Gln Asp Val
Val Gln His Gly Thr Glu Gln Asn Asn 290 295
300 Pro Phe Pro Glu Ala Asp Glu Lys Ile Phe Val Val
Ser Ala Thr Gly 305 310 315
320 Glu Ser Gln Met Leu Thr Arg Gly Gln Leu Lys Glu Tyr Ile Gly Gln
325 330 335 Gln Arg Gly
Glu Gly Tyr Val Phe Tyr Glu Asn Arg Ala Tyr Gly Val 340
345 350 Ala Gly Lys Ser Leu Phe Asp Asp
Gly Leu Gly Ala Ala Pro Gly Val 355 360
365 Pro Ser Gly Arg Ser Lys Phe Ser Pro Asp Val Leu Glu
Thr Val Pro 370 375 380
Ala Ser Pro Gly Leu Arg Arg Pro Ser Leu Gly Ala Val Glu Arg Gln 385
390 395 400 Asp Ser Gly Tyr
Asp Ser Leu Asp Gly Val Gly Ser Arg Ser Phe Ser 405
410 415 Leu Gly Glu Val Ser Asp Met Ala Ala
Val Glu Ala Ala Glu Leu Glu 420 425
430 Met Thr Arg Gln Val Leu His Ala Gly Ala Arg Gln Asp Asp
Ala Glu 435 440 445
Pro Gly Val Ser Gly Ala Ser Ala His Trp Gly Gln Arg Ala Leu Gln 450
455 460 Gly Ala Gln Ala Val
Ala Ala Ala Gln Arg Leu Val His Ala Ile Ala 465 470
475 480 Leu Met Thr Gln Phe Gly Arg Ala Gly Ser
Thr Asn Thr Pro Gln Glu 485 490
495 Ala Ala Ser Leu Ser Ala Ala Val Phe Gly Leu Gly Glu Ala Ser
Ser 500 505 510 Ala
Val Ala Glu Thr Val Ser Gly Phe Phe Arg Gly Ser Ser Arg Trp 515
520 525 Ala Gly Gly Phe Gly Val
Ala Gly Gly Ala Met Ala Leu Gly Gly Gly 530 535
540 Ile Ala Ala Ala Val Gly Ala Gly Met Ser Leu
Thr Asp Asp Ala Pro 545 550 555
560 Ala Gly Gln Lys Ala Ala Ala Gly Ala Gln Ile Ala Leu Gln Leu Thr
565 570 575 Gly Gly
Thr Val Glu Leu Ala Ser Ser Ile Ala Leu Ala Leu Ala Ala 580
585 590 Ala Arg Gly Val Thr Ser Gly
Leu Gln Val Ala Gly Ala Ser Ala Gly 595 600
605 Ala Ala Ala Gly Ala Leu Ala Ala Ala Leu Ser Pro
Met Glu Ile Tyr 610 615 620
Gly Leu Val Gln Gln Ser His Tyr Ala Asp Gln Leu Asp Lys Leu Ala 625
630 635 640 Gln Glu Ser
Ser Ala Tyr Gly Tyr Glu Gly Asp Ala Leu Leu Ala Gln 645
650 655 Leu Tyr Arg Asp Lys Thr Ala Ala
Glu Gly Ala Val Ala Gly Val Ser 660 665
670 Ala Val Leu Ser Thr Val Gly Ala Ala Val Ser Ile Ala
Ala Ala Ala 675 680 685
Ser Val Val Gly Ala Pro Val Ala Val Val Thr Ser Leu Leu Thr Gly 690
695 700 Ala Leu Asn Gly
Ile Leu Arg Gly Val Gln Gln Pro Ile Ile Glu Lys 705 710
715 720 Leu Ala Asn Asp Tyr Ala Arg Lys Ile
Asp Glu Leu Gly Gly Pro Gln 725 730
735 Ala Tyr Phe Glu Lys Asn Leu Gln Ala Arg His Glu Gln Leu
Ala Asn 740 745 750
Ser Asp Gly Leu Arg Lys Met Leu Ala Asp Leu Gln Ala Gly Trp Asn
755 760 765 Ala Ser Ser Val
Ile Gly Val Gln Thr Thr Glu Ile Ser Lys Ser Ala 770
775 780 Leu Glu Leu Ala Ala Ile Thr Gly
Asn Ala Asp Asn Leu Lys Ser Val 785 790
795 800 Asp Val Phe Val Asp Arg Phe Val Gln Gly Glu Arg
Val Ala Gly Gln 805 810
815 Pro Val Val Leu Asp Val Ala Ala Gly Gly Ile Asp Ile Ala Ser Arg
820 825 830 Lys Gly Glu
Arg Pro Ala Leu Thr Phe Ile Thr Pro Leu Ala Ala Pro 835
840 845 Gly Glu Glu Gln Arg Arg Arg Thr
Lys Thr Gly Arg Ser Glu Phe Thr 850 855
860 Thr Phe Val Glu Ile Val Gly Lys Gln Asp Arg Trp Arg
Ile Arg Asp 865 870 875
880 Gly Ala Ala Asp Thr Thr Ile Asp Leu Ala Lys Val Val Ser Gln Leu
885 890 895 Val Asp Ala Asn
Gly Val Leu Lys His Ser Ile Lys Leu Asp Val Ile 900
905 910 Gly Gly Asp Gly Asp Asp Val Val Leu
Ala Asn Ala Ser Arg Ile His 915 920
925 Tyr Asp Gly Gly Ala Gly Thr Asn Thr Val Ser Tyr Ala Ala
Leu Gly 930 935 940
Arg Gln Asp Ser Ile Thr Val Ser Ala Asp Gly Glu Arg Phe Asn Val 945
950 955 960 Arg Lys Gln Leu Asn
Asn Ala Asn Val Tyr Arg Glu Gly Val Ala Thr 965
970 975 Gln Thr Thr Ala Tyr Gly Lys Arg Thr Glu
Asn Val Gln Tyr Arg His 980 985
990 Val Glu Leu Ala Arg Val Gly Gln Val Val Glu Val Asp Thr
Leu Glu 995 1000 1005
His Val Gln His Ile Ile Gly Gly Ala Gly Asn Asp Ser Ile Thr 1010
1015 1020 Gly Asn Ala His Asp
Asn Phe Leu Ala Gly Gly Ser Gly Asp Asp 1025 1030
1035 Arg Leu Asp Gly Gly Ala Gly Asn Asp Thr
Leu Val Gly Gly Glu 1040 1045 1050
Gly Gln Asn Thr Val Ile Gly Gly Ala Gly Asp Asp Val Phe Leu
1055 1060 1065 Gln Asp
Leu Gly Val Trp Ser Asn Gln Leu Asp Gly Gly Ala Gly 1070
1075 1080 Val Asp Thr Val Lys Tyr Asn
Val His Gln Pro Ser Glu Glu Arg 1085 1090
1095 Leu Glu Arg Met Gly Asp Thr Gly Ile His Ala Asp
Leu Gln Lys 1100 1105 1110
Gly Thr Val Glu Lys Trp Pro Ala Leu Asn Leu Phe Ser Val Asp 1115
1120 1125 His Val Lys Asn Ile
Glu Asn Leu His Gly Ser Arg Leu Asn Asp 1130 1135
1140 Arg Ile Ala Gly Asp Asp Gln Asp Asn Glu
Leu Trp Gly His Asp 1145 1150 1155
Gly Asn Asp Thr Ile Arg Gly Arg Gly Gly Asp Asp Ile Leu Arg
1160 1165 1170 Gly Gly
Leu Gly Leu Asp Thr Leu Tyr Gly Glu Asp Gly Asn Asp 1175
1180 1185 Ile Phe Leu Gln Asp Asp Glu
Thr Val Ser Asp Asp Ile Asp Gly 1190 1195
1200 Gly Ala Gly Leu Asp Thr Val Asp Tyr Ser Ala Met
Ile His Pro 1205 1210 1215
Gly Arg Ile Val Ala Pro His Glu Tyr Gly Phe Gly Ile Glu Ala 1220
1225 1230 Asp Leu Ser Arg Glu
Trp Val Arg Lys Ala Ser Ala Leu Gly Val 1235 1240
1245 Asp Tyr Tyr Asp Asn Val Arg Asn Val Glu
Asn Val Ile Gly Thr 1250 1255 1260
Ser Met Lys Asp Val Leu Ile Gly Asp Ala Gln Ala Asn Thr Leu
1265 1270 1275 Met Gly
Gln Gly Gly Asp Asp Thr Val Arg Gly Gly Asp Gly Asp 1280
1285 1290 Asp Leu Leu Phe Gly Gly Asp
Gly Asn Asp Met Leu Tyr Gly Asp 1295 1300
1305 Ala Gly Asn Asp Thr Leu Tyr Gly Gly Leu Gly Asp
Asp Thr Leu 1310 1315 1320
Glu Gly Gly Ala Gly Asn Asp Trp Phe Gly Gln Thr Gln Ala Arg 1325
1330 1335 Glu His Asp Val Leu
Arg Gly Gly Asp Gly Val Asp Thr Val Asp 1340 1345
1350 Tyr Ser Gln Thr Gly Ala His Ala Gly Ile
Ala Ala Gly Arg Ile 1355 1360 1365
Gly Leu Gly Ile Leu Ala Asp Leu Gly Ala Gly Arg Val Asp Lys
1370 1375 1380 Leu Gly
Glu Ala Gly Ser Ser Ala Tyr Asp Thr Val Ser Gly Ile 1385
1390 1395 Glu Asn Val Val Gly Thr Glu
Leu Ala Asp Arg Ile Thr Gly Asp 1400 1405
1410 Ala Gln Ala Asn Val Leu Arg Gly Ala Gly Gly Ala
Asp Val Leu 1415 1420 1425
Ala Gly Gly Glu Gly Asp Asp Val Leu Leu Gly Gly Asp Gly Asp 1430
1435 1440 Asp Gln Leu Ser Gly
Asp Ala Gly Arg Asp Arg Leu Tyr Gly Glu 1445 1450
1455 Ala Gly Asp Asp Trp Phe Phe Gln Asp Ala
Ala Asn Ala Gly Asn 1460 1465 1470
Leu Leu Asp Gly Gly Asp Gly Arg Asp Thr Val Asp Phe Ser Gly
1475 1480 1485 Pro Gly
Arg Gly Leu Asp Ala Gly Ala Lys Gly Val Phe Leu Ser 1490
1495 1500 Leu Gly Lys Gly Phe Ala Ser
Leu Met Asp Glu Pro Glu Thr Ser 1505 1510
1515 Asn Val Leu Arg Asn Ile Glu Asn Ala Val Gly Ser
Ala Arg Asp 1520 1525 1530
Asp Val Leu Ile Gly Asp Ala Gly Ala Asn Val Leu Asn Gly Leu 1535
1540 1545 Ala Gly Asn Asp Val
Leu Ser Gly Gly Ala Gly Asp Asp Val Leu 1550 1555
1560 Leu Gly Asp Glu Gly Ser Asp Leu Leu Ser
Gly Asp Ala Gly Asn 1565 1570 1575
Asp Asp Leu Phe Gly Gly Gln Gly Asp Asp Thr Tyr Leu Phe Gly
1580 1585 1590 Val Gly
Tyr Gly His Asp Thr Ile Tyr Glu Ser Gly Gly Gly His 1595
1600 1605 Asp Thr Ile Arg Ile Asn Ala
Gly Ala Asp Gln Leu Trp Phe Ala 1610 1615
1620 Arg Gln Gly Asn Asp Leu Glu Ile Arg Ile Leu Gly
Thr Asp Asp 1625 1630 1635
Ala Leu Thr Val His Asp Trp Tyr Arg Asp Ala Asp His Arg Val 1640
1645 1650 Glu Ile Ile His Ala
Ala Asn Gln Ala Val Asp Gln Ala Gly Ile 1655 1660
1665 Glu Lys Leu Val Glu Ala Met Ala Gln Tyr
Pro Asp Pro Gly Ala 1670 1675 1680
Ala Ala Ala Ala Pro Pro Ala Ala Arg Val Pro Asp Thr Leu Met
1685 1690 1695 Gln Ser
Leu Ala Val Asn Trp Arg 1700 1705
31708PRTArtificial SequenceDescription of Artificial Sequence Synthetic
polypeptide 3Met Gln Gln Ser His Gln Ala Gly Tyr Ala Asn Ala Ala Asp
Arg Glu 1 5 10 15
Ser Gly Ile Pro Ala Ala Val Leu Asp Gly Ile Lys Ala Val Ala Lys
20 25 30 Glu Lys Asn Ala Thr
Leu Met Phe Arg Leu Val Asn Pro His Ser Thr 35
40 45 Ser Leu Ile Ala Glu Gly Val Ala Thr
Lys Gly Leu Gly Val His Ala 50 55
60 Lys Ser Ser Asp Trp Gly Leu Gln Ala Gly Tyr Ile Pro
Val Asn Pro 65 70 75
80 Asn Leu Ser Lys Leu Phe Gly Arg Ala Pro Glu Val Ile Ala Arg Ala
85 90 95 Asp Asn Asp Val
Asn Ser Ser Leu Ala His Gly His Thr Ala Val Asp 100
105 110 Leu Thr Leu Ser Lys Glu Arg Leu Asp
Tyr Leu Arg Gln Ala Gly Leu 115 120
125 Val Thr Gly Met Ala Asp Gly Val Val Ala Ser Asn His Ala
Gly Tyr 130 135 140
Glu Gln Phe Glu Phe Arg Val Lys Glu Thr Ser Asp Gly Arg Tyr Ala 145
150 155 160 Val Gln Tyr Arg Arg
Lys Gly Gly Asp Asp Phe Glu Ala Val Lys Val 165
170 175 Ile Gly Asn Ala Ala Gly Ile Pro Leu Thr
Ala Asp Gly Ser Ile Asp 180 185
190 Met Phe Ala Ile Met Pro His Leu Ser Asn Phe Arg Asp Ser Ala
Arg 195 200 205 Ser
Ser Val Thr Ser Gly Asp Ser Val Thr Asp Tyr Leu Ala Arg Thr 210
215 220 Arg Arg Ala Ala Ser Glu
Ala Thr Gly Gly Leu Asp Arg Glu Arg Ile 225 230
235 240 Asp Leu Leu Trp Lys Ile Ala Arg Ala Gly Ala
Arg Ser Ala Val Gly 245 250
255 Thr Glu Ala Arg Arg Gln Phe Arg Tyr Asp Gly Asp Met Asn Ile Gly
260 265 270 Val Ile
Thr Asp Phe Glu Leu Glu Val Arg Asn Ala Leu Asn Arg Arg 275
280 285 Ala His Ala Val Gly Ala Gln
Asp Val Val Gln His Gly Thr Glu Gln 290 295
300 Asn Asn Pro Phe Pro Glu Ala Asp Glu Lys Ile Phe
Val Val Ser Ala 305 310 315
320 Thr Gly Glu Ser Gln Met Leu Thr Arg Gly Gln Leu Lys Glu Tyr Ile
325 330 335 Gly Gln Gln
Arg Gly Glu Gly Tyr Val Phe Tyr Glu Asn Arg Ala Tyr 340
345 350 Gly Val Ala Gly Lys Ser Leu Phe
Asp Asp Gly Leu Gly Ala Ala Pro 355 360
365 Gly Val Pro Ser Gly Arg Ser Lys Phe Ser Pro Asp Val
Leu Glu Thr 370 375 380
Val Pro Ala Ser Pro Gly Leu Arg Arg Pro Ser Leu Gly Ala Val Glu 385
390 395 400 Arg Gln Asp Ser
Gly Tyr Asp Ser Leu Asp Gly Val Gly Ser Arg Ser 405
410 415 Phe Ser Leu Gly Glu Val Ser Asp Met
Ala Ala Val Glu Ala Ala Glu 420 425
430 Leu Glu Met Thr Arg Gln Val Leu His Ala Gly Ala Arg Gln
Asp Asp 435 440 445
Ala Glu Pro Gly Val Ser Gly Ala Ser Ala His Trp Gly Gln Arg Ala 450
455 460 Leu Gln Gly Ala Gln
Ala Val Ala Ala Ala Gln Arg Leu Val His Ala 465 470
475 480 Ile Ala Leu Met Thr Gln Phe Gly Arg Ala
Gly Ser Thr Asn Thr Pro 485 490
495 Gln Glu Ala Ala Ser Leu Ser Ala Ala Val Phe Gly Leu Gly Glu
Ala 500 505 510 Ser
Ser Ala Val Ala Glu Thr Val Ser Gly Phe Phe Arg Gly Ser Ser 515
520 525 Arg Trp Ala Gly Gly Phe
Gly Val Ala Gly Gly Ala Met Ala Leu Gly 530 535
540 Gly Gly Ile Ala Ala Ala Val Gly Ala Gly Met
Ser Leu Thr Asp Asp 545 550 555
560 Ala Pro Ala Gly Gln Lys Ala Ala Ala Gly Ala Gln Ile Ala Leu Gln
565 570 575 Leu Thr
Gly Gly Thr Val Glu Leu Ala Ser Ser Ile Ala Leu Ala Leu 580
585 590 Ala Ala Ala Arg Gly Val Thr
Ser Gly Leu Gln Val Ala Gly Ala Ser 595 600
605 Ala Gly Ala Ala Ala Gly Ala Leu Ala Ala Ala Leu
Ser Pro Met Glu 610 615 620
Ile Tyr Gly Leu Val Gln Gln Ser His Tyr Ala Asp Gln Leu Asp Lys 625
630 635 640 Leu Ala Gln
Glu Ser Ser Ala Tyr Gly Tyr Glu Gly Asp Ala Leu Leu 645
650 655 Ala Gln Leu Tyr Arg Asp Lys Thr
Ala Ala Glu Gly Ala Val Ala Gly 660 665
670 Val Ser Ala Val Leu Ser Thr Val Gly Ala Ala Val Ser
Ile Ala Ala 675 680 685
Ala Ala Ser Val Val Gly Ala Pro Val Ala Val Val Thr Ser Leu Leu 690
695 700 Thr Gly Ala Leu
Asn Gly Ile Leu Arg Gly Val Gln Gln Pro Ile Ile 705 710
715 720 Glu Lys Leu Ala Asn Asp Tyr Ala Arg
Lys Ile Asp Glu Leu Gly Gly 725 730
735 Pro Gln Ala Tyr Phe Glu Lys Asn Leu Gln Ala Arg His Glu
Gln Leu 740 745 750
Ala Asn Ser Asp Gly Leu Arg Lys Met Leu Ala Asp Leu Gln Ala Gly
755 760 765 Trp Asn Ala Ser
Ser Val Ile Gly Val Gln Thr Thr Glu Ile Ser Lys 770
775 780 Ser Ala Leu Glu Leu Ala Ala Ile
Thr Gly Asn Ala Asp Asn Leu Lys 785 790
795 800 Ser Val Asp Val Phe Val Asp Arg Phe Val Gln Gly
Glu Arg Val Ala 805 810
815 Gly Gln Pro Val Val Leu Asp Val Ala Ala Gly Gly Ile Asp Ile Ala
820 825 830 Ser Arg Lys
Gly Glu Arg Pro Ala Leu Thr Phe Ile Thr Pro Leu Ala 835
840 845 Ala Pro Gly Glu Glu Gln Arg Arg
Arg Thr Lys Thr Gly Arg Ser Glu 850 855
860 Phe Thr Thr Phe Val Glu Ile Val Gly Lys Gln Asp Arg
Trp Arg Ile 865 870 875
880 Arg Asp Gly Ala Ala Asp Thr Thr Ile Asp Leu Ala Lys Val Val Ser
885 890 895 Gln Leu Val Asp
Ala Asn Gly Val Leu Lys His Ser Ile Lys Leu Asp 900
905 910 Val Ile Gly Gly Asp Gly Asp Asp Val
Val Leu Ala Asn Ala Ser Arg 915 920
925 Ile His Tyr Asp Gly Gly Ala Gly Thr Asn Thr Val Ser Tyr
Ala Ala 930 935 940
Leu Gly Arg Gln Asp Ser Ile Thr Val Ser Ala Asp Gly Glu Arg Phe 945
950 955 960 Asn Val Arg Lys Gln
Leu Asn Asn Ala Asn Val Tyr Arg Glu Gly Val 965
970 975 Ala Thr Gln Thr Thr Ala Tyr Gly Lys Arg
Thr Glu Asn Val Gln Tyr 980 985
990 Arg His Val Glu Leu Ala Arg Val Gly Gln Val Val Glu Val
Asp Thr 995 1000 1005
Leu Glu His Val Gln His Ile Ile Gly Gly Ala Gly Asn Asp Ser 1010
1015 1020 Ile Thr Gly Asn Ala
His Asp Asn Phe Leu Ala Gly Gly Ser Gly 1025 1030
1035 Asp Asp Arg Leu Asp Gly Gly Ala Gly Asn
Asp Thr Leu Val Gly 1040 1045 1050
Gly Glu Gly Gln Asn Thr Val Ile Gly Gly Ala Gly Asp Asp Val
1055 1060 1065 Phe Leu
Gln Asp Leu Gly Val Trp Ser Asn Gln Leu Asp Gly Gly 1070
1075 1080 Ala Gly Val Asp Thr Val Lys
Tyr Asn Val His Gln Pro Ser Glu 1085 1090
1095 Glu Arg Leu Glu Arg Met Gly Asp Thr Gly Ile His
Ala Asp Leu 1100 1105 1110
Gln Lys Gly Thr Val Glu Lys Trp Pro Ala Leu Asn Leu Phe Ser 1115
1120 1125 Val Asp His Val Lys
Asn Ile Glu Asn Leu His Gly Ser Arg Leu 1130 1135
1140 Asn Asp Arg Ile Ala Gly Asp Asp Gln Asp
Asn Glu Leu Trp Gly 1145 1150 1155
His Asp Gly Asn Asp Thr Ile Arg Gly Arg Gly Gly Asp Asp Ile
1160 1165 1170 Leu Arg
Gly Gly Leu Gly Leu Asp Thr Leu Tyr Gly Glu Asp Gly 1175
1180 1185 Asn Asp Ile Phe Leu Gln Asp
Asp Glu Thr Val Ser Asp Asp Ile 1190 1195
1200 Asp Gly Gly Ala Gly Leu Asp Thr Val Asp Tyr Ser
Ala Met Ile 1205 1210 1215
His Pro Gly Arg Ile Val Ala Pro His Glu Tyr Gly Phe Gly Ile 1220
1225 1230 Glu Ala Asp Leu Ser
Arg Glu Trp Val Arg Lys Ala Ser Ala Leu 1235 1240
1245 Gly Val Asp Tyr Tyr Asp Asn Val Arg Asn
Val Glu Asn Val Ile 1250 1255 1260
Gly Thr Ser Met Lys Asp Val Leu Ile Gly Asp Ala Gln Ala Asn
1265 1270 1275 Thr Leu
Met Gly Gln Gly Gly Asp Asp Thr Val Arg Gly Gly Asp 1280
1285 1290 Gly Asp Asp Leu Leu Phe Gly
Gly Asp Gly Asn Asp Met Leu Tyr 1295 1300
1305 Gly Asp Ala Gly Asn Asp Thr Leu Tyr Gly Gly Leu
Gly Asp Asp 1310 1315 1320
Thr Leu Glu Gly Gly Ala Gly Asn Asp Trp Phe Gly Gln Thr Gln 1325
1330 1335 Ala Arg Glu His Asp
Val Leu Arg Gly Gly Asp Gly Val Asp Thr 1340 1345
1350 Val Asp Tyr Ser Gln Thr Gly Ala His Ala
Gly Ile Ala Ala Gly 1355 1360 1365
Arg Ile Gly Leu Gly Ile Leu Ala Asp Leu Gly Ala Gly Arg Val
1370 1375 1380 Asp Lys
Leu Gly Glu Ala Gly Ser Ser Ala Tyr Asp Thr Val Ser 1385
1390 1395 Gly Ile Glu Asn Val Val Gly
Thr Glu Leu Ala Asp Arg Ile Thr 1400 1405
1410 Gly Asp Ala Gln Ala Asn Val Leu Arg Gly Ala Gly
Gly Ala Asp 1415 1420 1425
Val Leu Ala Gly Gly Glu Gly Asp Asp Val Leu Leu Gly Gly Asp 1430
1435 1440 Gly Asp Asp Gln Leu
Ser Gly Asp Ala Gly Arg Asp Arg Leu Tyr 1445 1450
1455 Gly Glu Ala Gly Asp Asp Trp Phe Phe Gln
Asp Ala Ala Asn Ala 1460 1465 1470
Gly Asn Leu Leu Asp Gly Gly Asp Gly Arg Asp Thr Val Asp Phe
1475 1480 1485 Ser Gly
Pro Gly Arg Gly Leu Asp Ala Gly Ala Lys Gly Val Phe 1490
1495 1500 Leu Ser Leu Gly Lys Gly Phe
Ala Ser Leu Met Asp Glu Pro Glu 1505 1510
1515 Thr Ser Asn Val Leu Arg Asn Ile Glu Asn Ala Val
Gly Ser Ala 1520 1525 1530
Arg Asp Asp Val Leu Ile Gly Asp Ala Gly Ala Asn Val Leu Asn 1535
1540 1545 Gly Leu Ala Gly Asn
Asp Val Leu Ser Gly Gly Ala Gly Asp Asp 1550 1555
1560 Val Leu Leu Gly Asp Glu Gly Ser Asp Leu
Leu Ser Gly Asp Ala 1565 1570 1575
Gly Asn Asp Asp Leu Phe Gly Gly Gln Gly Asp Asp Thr Tyr Leu
1580 1585 1590 Phe Gly
Val Gly Tyr Gly His Asp Thr Ile Tyr Glu Ser Gly Gly 1595
1600 1605 Gly His Asp Thr Ile Arg Ile
Asn Ala Gly Ala Asp Gln Leu Trp 1610 1615
1620 Phe Ala Arg Gln Gly Asn Asp Leu Glu Ile Arg Ile
Leu Gly Thr 1625 1630 1635
Asp Asp Ala Leu Thr Val His Asp Trp Tyr Arg Asp Ala Asp His 1640
1645 1650 Arg Val Glu Ile Ile
His Ala Ala Asn Gln Ala Val Asp Gln Ala 1655 1660
1665 Gly Ile Glu Lys Leu Val Glu Ala Met Ala
Gln Tyr Pro Asp Pro 1670 1675 1680
Gly Ala Ala Ala Ala Ala Pro Pro Ala Ala Arg Val Pro Asp Thr
1685 1690 1695 Leu Met
Gln Ser Leu Ala Val Asn Trp Arg 1700 1705
41720PRTArtificial SequenceDescription of Artificial Sequence Synthetic
polypeptide 4Met Gln Gln Ser His Gln Ala Gly Tyr Ala Asn Ala Ala Asp
Arg Glu 1 5 10 15
Ser Gly Ile Pro Ala Ala Val Leu Asp Gly Ile Lys Ala Val Ala Lys
20 25 30 Glu Lys Asn Ala Thr
Leu Met Phe Arg Leu Val Asn Pro His Ser Thr 35
40 45 Ser Leu Ile Ala Glu Gly Val Ala Thr
Lys Gly Leu Gly Val His Ala 50 55
60 Lys Ser Ser Asp Trp Gly Leu Gln Ala Gly Tyr Ile Pro
Val Asn Pro 65 70 75
80 Asn Leu Ser Lys Leu Phe Gly Arg Ala Pro Glu Val Ile Ala Arg Ala
85 90 95 Asp Asn Asp Val
Asn Ser Ser Leu Ala His Gly His Thr Ala Val Asp 100
105 110 Leu Thr Leu Ser Lys Glu Arg Leu Asp
Tyr Leu Arg Gln Ala Gly Leu 115 120
125 Val Thr Gly Met Ala Asp Gly Val Val Ala Ser Asn His Ala
Gly Tyr 130 135 140
Glu Gln Phe Glu Phe Arg Val Lys Glu Thr Ser Asp Gly Arg Tyr Ala 145
150 155 160 Val Gln Tyr Arg Arg
Lys Gly Gly Asp Asp Phe Glu Ala Val Lys Val 165
170 175 Ile Gly Asn Ala Ala Gly Ile Pro Leu Thr
Ala Asp Gly Ser Ile Asp 180 185
190 Met Phe Ala Ile Met Pro His Leu Ser Asn Phe Arg Asp Ser Ala
Arg 195 200 205 Ser
Ser Val Thr Ser Gly Asp Ser Val Thr Asp Tyr Leu Ala Arg Thr 210
215 220 Arg Arg Ala Ala Ser Glu
Ala Thr Gly Gly Val Leu Ser Ile Ile Asn 225 230
235 240 Phe Glu Lys Leu Val His Leu Asp Arg Glu Arg
Ile Asp Leu Leu Trp 245 250
255 Lys Ile Ala Arg Ala Gly Ala Arg Ser Ala Val Gly Thr Glu Ala Arg
260 265 270 Arg Gln
Phe Arg Tyr Asp Gly Asp Met Asn Ile Gly Val Ile Thr Asp 275
280 285 Phe Glu Leu Glu Val Arg Asn
Ala Leu Asn Arg Arg Ala His Ala Val 290 295
300 Gly Ala Gln Asp Val Val Gln His Gly Thr Glu Gln
Asn Asn Pro Phe 305 310 315
320 Pro Glu Ala Asp Glu Lys Ile Phe Val Val Ser Ala Thr Gly Glu Ser
325 330 335 Gln Met Leu
Thr Arg Gly Gln Leu Lys Glu Tyr Ile Gly Gln Gln Arg 340
345 350 Gly Glu Gly Tyr Val Phe Tyr Glu
Asn Arg Ala Tyr Gly Val Ala Gly 355 360
365 Lys Ser Leu Phe Asp Asp Gly Leu Gly Ala Ala Pro Gly
Val Pro Ser 370 375 380
Gly Arg Ser Lys Phe Ser Pro Asp Val Leu Glu Thr Val Pro Ala Ser 385
390 395 400 Pro Gly Leu Arg
Arg Pro Ser Leu Gly Ala Val Glu Arg Gln Asp Ser 405
410 415 Gly Tyr Asp Ser Leu Asp Gly Val Gly
Ser Arg Ser Phe Ser Leu Gly 420 425
430 Glu Val Ser Asp Met Ala Ala Val Glu Ala Ala Glu Leu Glu
Met Thr 435 440 445
Arg Gln Val Leu His Ala Gly Ala Arg Gln Asp Asp Ala Glu Pro Gly 450
455 460 Val Ser Gly Ala Ser
Ala His Trp Gly Gln Arg Ala Leu Gln Gly Ala 465 470
475 480 Gln Ala Val Ala Ala Ala Gln Arg Leu Val
His Ala Ile Ala Leu Met 485 490
495 Thr Gln Phe Gly Arg Ala Gly Ser Thr Asn Thr Pro Gln Glu Ala
Ala 500 505 510 Ser
Leu Ser Ala Ala Val Phe Gly Leu Gly Glu Ala Ser Ser Ala Val 515
520 525 Ala Glu Thr Val Ser Gly
Phe Phe Arg Gly Ser Ser Arg Trp Ala Gly 530 535
540 Gly Phe Gly Val Ala Gly Gly Ala Met Ala Leu
Gly Gly Gly Ile Ala 545 550 555
560 Ala Ala Val Gly Ala Gly Met Ser Leu Thr Asp Asp Ala Pro Ala Gly
565 570 575 Gln Lys
Ala Ala Ala Gly Ala Gln Ile Ala Leu Gln Leu Thr Gly Gly 580
585 590 Thr Val Glu Leu Ala Ser Ser
Ile Ala Leu Ala Leu Ala Ala Ala Arg 595 600
605 Gly Val Thr Ser Gly Leu Gln Val Ala Gly Ala Ser
Ala Gly Ala Ala 610 615 620
Ala Gly Ala Leu Ala Ala Ala Leu Ser Pro Met Glu Ile Tyr Gly Leu 625
630 635 640 Val Gln Gln
Ser His Tyr Ala Asp Gln Leu Asp Lys Leu Ala Gln Glu 645
650 655 Ser Ser Ala Tyr Gly Tyr Glu Gly
Asp Ala Leu Leu Ala Gln Leu Tyr 660 665
670 Arg Asp Lys Thr Ala Ala Glu Gly Ala Val Ala Gly Val
Ser Ala Val 675 680 685
Leu Ser Thr Val Gly Ala Ala Val Ser Ile Ala Ala Ala Ala Ser Val 690
695 700 Val Gly Ala Pro
Val Ala Val Val Thr Ser Leu Leu Thr Gly Ala Leu 705 710
715 720 Asn Gly Ile Leu Arg Gly Val Gln Gln
Pro Ile Ile Glu Lys Leu Ala 725 730
735 Asn Asp Tyr Ala Arg Lys Ile Asp Glu Leu Gly Gly Pro Gln
Ala Tyr 740 745 750
Phe Glu Lys Asn Leu Gln Ala Arg His Glu Gln Leu Ala Asn Ser Asp
755 760 765 Gly Leu Arg Lys
Met Leu Ala Asp Leu Gln Ala Gly Trp Asn Ala Ser 770
775 780 Ser Val Ile Gly Val Gln Thr Thr
Glu Ile Ser Lys Ser Ala Leu Glu 785 790
795 800 Leu Ala Ala Ile Thr Gly Asn Ala Asp Asn Leu Lys
Ser Val Asp Val 805 810
815 Phe Val Asp Arg Phe Val Gln Gly Glu Arg Val Ala Gly Gln Pro Val
820 825 830 Val Leu Asp
Val Ala Ala Gly Gly Ile Asp Ile Ala Ser Arg Lys Gly 835
840 845 Glu Arg Pro Ala Leu Thr Phe Ile
Thr Pro Leu Ala Ala Pro Gly Glu 850 855
860 Glu Gln Arg Arg Arg Thr Lys Thr Gly Arg Ser Glu Phe
Thr Thr Phe 865 870 875
880 Val Glu Ile Val Gly Lys Gln Asp Arg Trp Arg Ile Arg Asp Gly Ala
885 890 895 Ala Asp Thr Thr
Ile Asp Leu Ala Lys Val Val Ser Gln Leu Val Asp 900
905 910 Ala Asn Gly Val Leu Lys His Ser Ile
Lys Leu Asp Val Ile Gly Gly 915 920
925 Asp Gly Asp Asp Val Val Leu Ala Asn Ala Ser Arg Ile His
Tyr Asp 930 935 940
Gly Gly Ala Gly Thr Asn Thr Val Ser Tyr Ala Ala Leu Gly Arg Gln 945
950 955 960 Asp Ser Ile Thr Val
Ser Ala Asp Gly Glu Arg Phe Asn Val Arg Lys 965
970 975 Gln Leu Asn Asn Ala Asn Val Tyr Arg Glu
Gly Val Ala Thr Gln Thr 980 985
990 Thr Ala Tyr Gly Lys Arg Thr Glu Asn Val Gln Tyr Arg His
Val Glu 995 1000 1005
Leu Ala Arg Val Gly Gln Val Val Glu Val Asp Thr Leu Glu His 1010
1015 1020 Val Gln His Ile Ile
Gly Gly Ala Gly Asn Asp Ser Ile Thr Gly 1025 1030
1035 Asn Ala His Asp Asn Phe Leu Ala Gly Gly
Ser Gly Asp Asp Arg 1040 1045 1050
Leu Asp Gly Gly Ala Gly Asn Asp Thr Leu Val Gly Gly Glu Gly
1055 1060 1065 Gln Asn
Thr Val Ile Gly Gly Ala Gly Asp Asp Val Phe Leu Gln 1070
1075 1080 Asp Leu Gly Val Trp Ser Asn
Gln Leu Asp Gly Gly Ala Gly Val 1085 1090
1095 Asp Thr Val Lys Tyr Asn Val His Gln Pro Ser Glu
Glu Arg Leu 1100 1105 1110
Glu Arg Met Gly Asp Thr Gly Ile His Ala Asp Leu Gln Lys Gly 1115
1120 1125 Thr Val Glu Lys Trp
Pro Ala Leu Asn Leu Phe Ser Val Asp His 1130 1135
1140 Val Lys Asn Ile Glu Asn Leu His Gly Ser
Arg Leu Asn Asp Arg 1145 1150 1155
Ile Ala Gly Asp Asp Gln Asp Asn Glu Leu Trp Gly His Asp Gly
1160 1165 1170 Asn Asp
Thr Ile Arg Gly Arg Gly Gly Asp Asp Ile Leu Arg Gly 1175
1180 1185 Gly Leu Gly Leu Asp Thr Leu
Tyr Gly Glu Asp Gly Asn Asp Ile 1190 1195
1200 Phe Leu Gln Asp Asp Glu Thr Val Ser Asp Asp Ile
Asp Gly Gly 1205 1210 1215
Ala Gly Leu Asp Thr Val Asp Tyr Ser Ala Met Ile His Pro Gly 1220
1225 1230 Arg Ile Val Ala Pro
His Glu Tyr Gly Phe Gly Ile Glu Ala Asp 1235 1240
1245 Leu Ser Arg Glu Trp Val Arg Lys Ala Ser
Ala Leu Gly Val Asp 1250 1255 1260
Tyr Tyr Asp Asn Val Arg Asn Val Glu Asn Val Ile Gly Thr Ser
1265 1270 1275 Met Lys
Asp Val Leu Ile Gly Asp Ala Gln Ala Asn Thr Leu Met 1280
1285 1290 Gly Gln Gly Gly Asp Asp Thr
Val Arg Gly Gly Asp Gly Asp Asp 1295 1300
1305 Leu Leu Phe Gly Gly Asp Gly Asn Asp Met Leu Tyr
Gly Asp Ala 1310 1315 1320
Gly Asn Asp Thr Leu Tyr Gly Gly Leu Gly Asp Asp Thr Leu Glu 1325
1330 1335 Gly Gly Ala Gly Asn
Asp Trp Phe Gly Gln Thr Gln Ala Arg Glu 1340 1345
1350 His Asp Val Leu Arg Gly Gly Asp Gly Val
Asp Thr Val Asp Tyr 1355 1360 1365
Ser Gln Thr Gly Ala His Ala Gly Ile Ala Ala Gly Arg Ile Gly
1370 1375 1380 Leu Gly
Ile Leu Ala Asp Leu Gly Ala Gly Arg Val Asp Lys Leu 1385
1390 1395 Gly Glu Ala Gly Ser Ser Ala
Tyr Asp Thr Val Ser Gly Ile Glu 1400 1405
1410 Asn Val Val Gly Thr Glu Leu Ala Asp Arg Ile Thr
Gly Asp Ala 1415 1420 1425
Gln Ala Asn Val Leu Arg Gly Ala Gly Gly Ala Asp Val Leu Ala 1430
1435 1440 Gly Gly Glu Gly Asp
Asp Val Leu Leu Gly Gly Asp Gly Asp Asp 1445 1450
1455 Gln Leu Ser Gly Asp Ala Gly Arg Asp Arg
Leu Tyr Gly Glu Ala 1460 1465 1470
Gly Asp Asp Trp Phe Phe Gln Asp Ala Ala Asn Ala Gly Asn Leu
1475 1480 1485 Leu Asp
Gly Gly Asp Gly Arg Asp Thr Val Asp Phe Ser Gly Pro 1490
1495 1500 Gly Arg Gly Leu Asp Ala Gly
Ala Lys Gly Val Phe Leu Ser Leu 1505 1510
1515 Gly Lys Gly Phe Ala Ser Leu Met Asp Glu Pro Glu
Thr Ser Asn 1520 1525 1530
Val Leu Arg Asn Ile Glu Asn Ala Val Gly Ser Ala Arg Asp Asp 1535
1540 1545 Val Leu Ile Gly Asp
Ala Gly Ala Asn Val Leu Asn Gly Leu Ala 1550 1555
1560 Gly Asn Asp Val Leu Ser Gly Gly Ala Gly
Asp Asp Val Leu Leu 1565 1570 1575
Gly Asp Glu Gly Ser Asp Leu Leu Ser Gly Asp Ala Gly Asn Asp
1580 1585 1590 Asp Leu
Phe Gly Gly Gln Gly Asp Asp Thr Tyr Leu Phe Gly Val 1595
1600 1605 Gly Tyr Gly His Asp Thr Ile
Tyr Glu Ser Gly Gly Gly His Asp 1610 1615
1620 Thr Ile Arg Ile Asn Ala Gly Ala Asp Gln Leu Trp
Phe Ala Arg 1625 1630 1635
Gln Gly Asn Asp Leu Glu Ile Arg Ile Leu Gly Thr Asp Asp Ala 1640
1645 1650 Leu Thr Val His Asp
Trp Tyr Arg Asp Ala Asp His Arg Val Glu 1655 1660
1665 Ile Ile His Ala Ala Asn Gln Ala Val Asp
Gln Ala Gly Ile Glu 1670 1675 1680
Lys Leu Val Glu Ala Met Ala Gln Tyr Pro Asp Pro Gly Ala Ala
1685 1690 1695 Ala Ala
Ala Pro Pro Ala Ala Arg Val Pro Asp Thr Leu Met Gln 1700
1705 1710 Ser Leu Ala Val Asn Trp Arg
1715 1720 58825DNAArtificial SequenceDescription of
Artificial Sequence Synthetic polynucleotide 5cggaagagcg cccaatacgc
aaaccgcctc tccccgcgcg ttggccgatt cattaatgca 60gctggcacga caggtttccc
gactggaaag cgggcagtga gcgcaacgca attaatgtga 120gttagctcac tcattaggca
ccccaggctt tacactttat gcttccggct cgtatgttgt 180gtggaattgt gagcggataa
caatttcaca caggaaacag ctatgaccat gattacgaat 240ttaatacgac tcactatagg
gaaagctcta gaaataattt tgtttaactt taagaaggag 300atatacatat gcttccgtcc
gcccaagcgc cctccctcct caatcccacc gacgacttcg 360cggcactggg caatattgcc
tggctgtgga tgaactctcc catgcaccgc gactggccgg 420tgcatctgct cgcacgcaac
acgctcgcgc cgattcaact gggccaatac attctgctgc 480gatgcaatga cgtgccggtt
gcatactgca gctgggccct aatggacgcc gacaccgaac 540tctcctatgt catggcgccc
tcgtcgctgg gcgggaatgc ctggaactgc ggcgaccgac 600tgtggatcat cgactggatc
gcgccattct cgcgcgacga caatcgtgcg ctgcgccgcg 660cgctggccga acggcacccc
gacagcgtgg gccgttcgct gcgcgttcgg cgcggcggcg 720acaccgcgcg cgtcaaggag
taccgaggcc gcgcgctgga cgcggccgcc actcgcgcgc 780agctggaccg ctaccatgcc
gaactgatcg caggactgcg cgcgagcaac ggcggatacg 840cgccgcgagg ccggggcacc
gcctaaggat cctctagagc ttgcatgccc tggcacgaca 900ggtttcccga ctggaaagcg
ggcagtgagc gcaacgcaat taatgtgagt tagctcactc 960attaggcacc ccaggcttta
cactttatgc ttccggctcg tatgttgtgt ggaattgtga 1020gcggataaca atttcacaca
ggaaacagct atgaccatgc agcaatcgca tcaggctggt 1080tacgcaaacg ccgccgaccg
ggagtctggc atccccgcag ccgtactcga tggcatcaag 1140gccgtggcga aggaaaaaaa
cgccacattg atgttccgcc tggtcaaccc ccattccacc 1200agcctgattg ccgaaggggt
ggccaccaaa ggattgggcg tgcacgccaa gtcgtccgat 1260tgggggttgc aggcgggcta
cattcccgtc aacccgaatc tttccaaact gttcggccgt 1320gcgcccgagg tgatcgcgcg
ggccgacaac gacgtcaaca gcagcctggc gcatggccat 1380accgcggtcg acctgacgct
gtcgaaagag cggcttgact atctgcggca agcgggcctg 1440gtcaccggca tggccgatgg
cgtggtcgcg agcaaccacg caggctacga gcagttcgag 1500tttcgcgtga aggaaacctc
ggacgggcgc tatgccgtgc agtatcgccg caagggcggc 1560gacgatttcg aggcggtcaa
ggtgatcggc aatgccgccg gtattccact gacggcggat 1620ggatccatcg acatgttcgc
cattatgccg catctgtcca acttccgcga ctcggcgcgc 1680agttcggtga ccagcggcga
ttcggtgacc gattacctgg cgcgcacgcg gcgggccgcc 1740agcgaggcca cgggcggtgt
acacctggat cgcgaacgca tcgacttgtt gtggaaaatc 1800gctcgcgccg gcgcccgttc
cgcagtgggc accgaggcgc gtcgccagtt ccgctacgac 1860ggcgacatga atatcggcgt
gatcaccgat ttcgagctgg aagtgcgcaa tgcgctgaac 1920aggcgggcgc acgccgtcgg
cgcgcaggac gtggtccagc atggcactga gcagaacaat 1980cctttcccgg aggcagatga
gaagattttc gtcgtatcgg ccaccggtga aagccagatg 2040ctcacgcgcg ggcaactgaa
ggaatacatt ggccagcagc gcggcgaggg ctatgtcttc 2100tacgagaacc gtgcatacgg
cgtggcgggg aaaagcctgt tcgacgatgg gctgggagcc 2160gcgcccggcg tgccgagcgg
acgttcgaag ttctcgccgg atgtactgga aacggtgccg 2220gcgtcacccg gattgcggcg
gccgtcgctg ggcgcagtgg aacgccagga ttccggctat 2280gacagccttg atggggtggg
atcgcgatcg ttctcgttgg gcgaggtgtc cgacatggcc 2340gccgtggaag cggcggaact
ggaaatgacc cggcaagtct tgcacgccgg ggcgcggcag 2400gacgatgccg agccgggcgt
gagcggtgcg tcggcgcact gggggcagcg ggcgctgcag 2460ggcgcccagg cggtggcggc
ggcgcagcgg ctggttcatg ccattgccct gatgacgcaa 2520ttcggccggg ccggttccac
caacacgccg caggaagcgg cctcgttgtc ggcggccgtg 2580ttcggcttgg gcgaggccag
cagcgccgtg gccgaaaccg tgagcggttt tttccgcggg 2640tcttcgcgct gggccggcgg
tttcggcgtg gctggcggcg cgatggcgct gggaggcggc 2700atcgccgcgg ccgttggcgc
cgggatgtcg ttgaccgatg acgcgccggc cggacagaag 2760gccgccgccg gagctccgat
cgcgctgcag ttaacgggtg gaacggtcga gctggcttct 2820tccatcgcgt tggcgctggc
cgcggcgcgc ggcgtgacca gcggcttgca ggtggccggg 2880gcgtcggccg gggcggctgc
cggcgcattg gccgcggcgc tcagtcccat ggagatctac 2940ggcctggtgc agcaatcgca
ctatgcggat cagctggaca agctggcgca ggaatcgagc 3000gcatacggtt acgagggcga
cgccttgctg gcccagctgt atcgcgacaa gacggccgcc 3060gagggcgccg tcgccggcgt
ctccgccgtc ctgagcacgg tgggggcggc ggtgtcgatc 3120gccgcggcgg ccagcgtggt
aggggccccg gtggcggtgg tcacttcctt gctgaccggg 3180gctctcaacg gcatcctgcg
cggcgtgcag cagcccatca tcgaaaagct ggccaacgat 3240tacgctcgca agatcgacga
gctgggcggg ccgcaagcgt acttcgagaa aaacctgcag 3300gcgcgtcacg aacaactggc
caattcggac ggcctacgga aaatgctggc cgacctgcag 3360gccggttgga acgccagcag
cgtgatcggg gtgcagacga cagagatctc caagtcggcg 3420ctcgaactgg ccgccattac
cggcaacgcg gacaacctga aatccgtcga cgtgttcgtg 3480gaccgcttcg tccagggcga
gcgggtggcc ggccagccgg tggtcctcga cgtcgccgcc 3540ggcggcatcg atatcgccag
ccgcaagggc gagcggccgg cgctgacgtt catcacgccg 3600ctggccgcgc caggagaaga
gcagcgccgg cgcacgaaaa cgggcagatc tgaattcacc 3660acattcgtcg agatcgtggg
caagcaggac cgctggcgca tccgggacgg cgcggccgac 3720accaccatcg atctggccaa
ggtggtgtcg caactggtcg acgccaatgg cgtgctcaag 3780cacagcatca aactggatgt
gatcggcgga gatggcgatg acgtcgtgct tgccaatgct 3840tcgcgcatcc attatgacgg
cggcgcgggc accaacacgg tcagctatgc cgccctgggt 3900cgacaggatt ccattaccgt
gtccgccgac ggggaacgtt tcaacgtgcg caagcagttg 3960aacaacgcca acgtgtatcg
cgaaggcgtg gctacccaga caaccgccta cggcaagcgc 4020acggagaatg tccaataccg
ccatgtcgag ctggcccgtg tcgggcaagt ggtggaggtc 4080gacacgctcg agcatgtgca
gcacatcatc ggcggggccg gcaacgattc gatcaccggc 4140aatgcgcacg acaacttcct
agccggcggg tcgggcgacg acaggctgga tggcggcgcc 4200ggcaacgaca ccctggttgg
cggcgagggc caaaacacgg tcatcggcgg cgccggcgac 4260gacgtattcc tgcaggacct
gggggtatgg agcaaccagc tcgatggcgg cgcgggcgtc 4320gataccgtga agtacaacgt
gcaccagcct tccgaggagc gcctcgaacg catgggcgac 4380acgggcatcc atgccgatct
tcaaaagggc acggtcgaga agtggccggc cctgaacctg 4440ttcagcgtcg accatgtcaa
gaatatcgag aatctgcacg gctcccgcct aaacgaccgc 4500atcgccggcg acgaccagga
caacgagctc tggggccacg atggcaacga cacgatacgc 4560ggccggggcg gcgacgacat
cctgcgcggc ggcctgggcc tggacacgct gtatggcgag 4620gacggcaacg acatcttcct
gcaggacgac gagaccgtca gcgatgacat cgacggcggc 4680gcggggctgg acaccgtcga
ctactccgcc atgatccatc caggcaggat cgttgcgccg 4740catgaatacg gcttcgggat
cgaggcggac ctgtccaggg aatgggtgcg caaggcgtcc 4800gcgctgggcg tggactatta
cgataatgtc cgcaatgtcg aaaacgtcat cggtacgagc 4860atgaaggatg tgctcatcgg
cgacgcgcaa gccaataccc tgatgggcca gggcggcgac 4920gataccgtgc gcggcggcga
cggcgatgat ctgctgttcg gcggcgacgg caacgacatg 4980ctgtatggcg acgccggcaa
cgacaccctc tacggggggc tgggcgacga tacccttgaa 5040ggcggcgcgg gcaacgattg
gttcggccag acgcaggcgc gcgagcatga cgtgctgcgc 5100ggcggagatg gggtggatac
cgtcgattac agccagaccg gcgcgcatgc cggcattgcc 5160gcgggtcgca tcgggctggg
catcctggct gacctgggcg ccggccgcgt cgacaagctg 5220ggcgaggccg gcagcagcgc
ctacgatacg gtttccggta tcgagaacgt ggtgggcacg 5280gaactggccg accgcatcac
gggcgatgcg caggccaacg tgctgcgcgg cgcgggtggc 5340gccgacgtgc ttgcgggcgg
cgagggcgac gatgtgctgc tgggcggcga cggcgacgac 5400cagctgtcgg gcgacgccgg
acgcgatcgc ttgtacggcg aagccggtga cgactggttc 5460ttccaggatg ccgccaatgc
cggcaatctg ctcgacggcg gcgacggccg cgataccgtg 5520gatttcagcg gcccgggccg
gggcctcgac gccggcgcaa agggcgtatt cctgagcttg 5580ggcaaggggt tcgccagcct
gatggacgaa cccgaaacca gcaacgtgtt gcgcaatatc 5640gagaacgccg tgggcagcgc
gcgtgatgac gtgctgatcg gcgacgcagg cgccaacgtc 5700ctcaatggcc tggcgggcaa
cgacgtgctg tccggcggcg ctggcgacga tgtgctgctg 5760ggcgacgagg gctcggacct
gctcagcggc gatgcgggca acgacgatct gttcggcggg 5820cagggcgatg atacttatct
gttcggggtc gggtacgggc acgacacgat ctacgaatcg 5880ggcggcggcc atgacaccat
ccgcatcaac gcgggggcgg accagctgtg gttcgcgcgc 5940cagggcaacg acctggagat
ccgcattctc ggcaccgacg atgcacttac cgtgcacgac 6000tggtatcgcg acgccgatca
ccgggtggaa atcatccatg ccgccaacca ggcggtagac 6060caggcaggca tcgaaaagct
ggtcgaggca atggcgcagt atccggaccc cggcgcggcg 6120gcggctgccc cgccggcggc
gcgcgtgccg gacacgctga tgcagtccct ggctgtcaac 6180tggcgctgaa gcgccgtgaa
tcacggcccg cctgcctcgc gcggcggcgc cgtctctttg 6240cgttcttctc cgaggtattt
cccatcatga attcactggc cgtcgtttta caacgtcgtg 6300actgggaaaa ccctggcgtt
acccaactta atcgccttgc agcacatccc cctttcgcca 6360gctggcgtaa tagcgaagag
gcccgcaccg atcgcccttc ccaacagttg cgcagcctga 6420atggcgaatg ggaaattgta
aacgttaata ttttgttaat attttgttaa aattcgcgtt 6480aaatttttgt taaatcagct
cattttttaa ccaataggcc gaaatcggca aaatccctta 6540taaatcaaaa gaatagaccg
agatagggtt gagtgttgtt ccagtttgga acaagagtcc 6600actattaaag aacgtggact
ccaacgtcaa agggcgaaaa accgtctatc agggcgatgg 6660cccactacgt gaaccatcac
cctaatcaag ttttttgggg tcgaggtgcc gtaaagcact 6720aaatcggaac cctaaaggga
tgccccgatt tagagcttga cggggaaagc cggcgaacgt 6780ggcgagaaag gaagggaaga
aagcgaaagg agcgggcgct agggcgctgg caagtgtagc 6840ggtcacgctg cgcgtaacca
ccacacccgc cgcgcttaat gcgccgctac agggcgcgtc 6900aggtggcact tttcggggaa
atgtgcgcgg aacccctatt tgtttatttt tctaaataca 6960ttcaaatatg tatccgctca
tgagacaata accctgataa atgcttcaat aatattgaaa 7020aaggaagagt atgagtattc
aacatttccg tgtcgccctt attccctttt ttgcggcatt 7080ttgccttcct gtttttgctc
acccagaaac gctggtgaaa gtaaaagatg ctgaagatca 7140gttgggtgca cgagtgggtt
acatcgaact ggatctcaac agcggtaaga tccttgagag 7200ttttcgcccc gaagaacgtt
ttccaatgat gagcactttt aaagttctgc tatgtggcgc 7260ggtattatcc cgtattgacg
ccgggcaaga gcaactcggt cgccgcatac actattctca 7320gaatgacttg gttgagtact
caccagtcac agaaaagcat cttacggatg gcatgacagt 7380aagagaatta tgcagtgctg
ccataaccat gagtgataac actgcggcca acttacttct 7440gacaacgatc ggaggaccga
aggagctaac cgcttttttg cacaacatgg gggatcatgt 7500aactcgcctt gatcgttggg
aaccggagct gaatgaagcc ataccaaacg acgagcgtga 7560caccacgatg cctgtagcaa
tggcaacaac gttgcgcaaa ctattaactg gcgaactact 7620tactctagct tcccggcaac
aattaataga ctggatggag gcggataaag ttgcaggacc 7680acttctgcgc tcggcccttc
cggctggctg gtttattgct gataaatctg gagccggtga 7740gcgtgggtct cgcggtatca
ttgcagcact ggggccagat ggtaagccct cccgtatcgt 7800agttatctac acgacgggga
gtcaggcaac tatggatgaa cgaaatagac agatcgctga 7860gataggtgcc tcactgatta
agcattggta actgtcagac caagtttact catatatact 7920ttagattgat ttaaaacttc
atttttaatt taaaaggatc taggtgaaga tcctttttga 7980taatctcatg accaaaatcc
cttaacgtga gttttcgttc cactgagcgt cagaccccgt 8040agaaaagatc aaaggatctt
cttgagatcc tttttttctg cgcgtaatct gctgcttgca 8100aacaaaaaaa ccaccgctac
cagcggtggt ttgtttgccg gatcaagagc taccaactct 8160ttttccgaag gtaactggct
tcagcagagc gcagatacca aatactgtcc ttctagtgta 8220gccgtagtta ggccaccact
tcaagaactc tgtagcaccg cctacatacc tcgctctgct 8280aatcctgtta ccagtggctg
ctgccagtgg cgataagtcg tgtcttaccg ggttggactc 8340aagacgatag ttaccggata
aggcgcagcg gtcgggctga acggggggtt cgtgcacaca 8400gcccagcttg gagcgaacga
cctacaccga actgagatac ctacagcgtg agctatgaga 8460aagcgccacg cttcccgaag
ggagaaaggc ggacaggtat ccggtaagcg gcagggtcgg 8520aacaggagag cgcacgaggg
agcttccagg gggaaacgcc tggtatcttt atagtcctgt 8580cgggtttcgc cacctctgac
ttgagcgtcg atttttgtga tgctcgtcag gggggcggag 8640cctatggaaa aacgccagca
acgcggcctt tttacggttc ctggcctttt gctggccttt 8700tgctcacatg ttctttcctg
cgttatcccc tgattctgtg gataaccgta ttaccgcctt 8760tgagtgagct gataccgctc
gccgcagccg aacgaccgag cgcagcgagt cagtgagcga 8820ggaag
882568855DNAArtificial
SequenceDescription of Artificial Sequence Synthetic polynucleotide
6cggaagagcg cccaatacgc aaaccgcctc tccccgcgcg ttggccgatt cattaatgca
60gctggcacga caggtttccc gactggaaag cgggcagtga gcgcaacgca attaatgtga
120gttagctcac tcattaggca ccccaggctt tacactttat gcttccggct cgtatgttgt
180gtggaattgt gagcggataa caatttcaca caggaaacag ctatgaccat gattacgaat
240ttaatacgac tcactatagg gaaagctcta gaaataattt tgtttaactt taagaaggag
300atatacatat gcttccgtcc gcccaagcgc cctccctcct caatcccacc gacgacttcg
360cggcactggg caatattgcc tggctgtgga tgaactctcc catgcaccgc gactggccgg
420tgcatctgct cgcacgcaac acgctcgcgc cgattcaact gggccaatac attctgctgc
480gatgcaatga cgtgccggtt gcatactgca gctgggccct aatggacgcc gacaccgaac
540tctcctatgt catggcgccc tcgtcgctgg gcgggaatgc ctggaactgc ggcgaccgac
600tgtggatcat cgactggatc gcgccattct cgcgcgacga caatcgtgcg ctgcgccgcg
660cgctggccga acggcacccc gacagcgtgg gccgttcgct gcgcgttcgg cgcggcggcg
720acaccgcgcg cgtcaaggag taccgaggcc gcgcgctgga cgcggccgcc actcgcgcgc
780agctggaccg ctaccatgcc gaactgatcg caggactgcg cgcgagcaac ggcggatacg
840cgccgcgagg ccggggcacc gcctaaggat cctctagagc ttgcatgccc tggcacgaca
900ggtttcccga ctggaaagcg ggcagtgagc gcaacgcaat taatgtgagt tagctcactc
960attaggcacc ccaggcttta cactttatgc ttccggctcg tatgttgtgt ggaattgtga
1020gcggataaca atttcacaca ggaaacagct atgaccatgc agcaatcgca tcaggctggt
1080tacgcaaacg ccgccgaccg ggagtctggc atccccgcag ccgtactcga tggcatcaag
1140gccgtggcga aggaaaaaaa cgccacattg atgttccgcc tggtcaaccc ccattccacc
1200agcctgattg ccgaaggggt ggccaccaaa ggattgggcg tgcacgccaa gtcgtccgat
1260tgggggttgc aggcgggcta cattcccgtc aacccgaatc tttccaaact gttcggccgt
1320gcgcccgagg tgatcgcgcg ggccgacaac gacgtcaaca gcagcctggc gcatggccat
1380accgcggtcg acctgacgct gtcgaaagag cggcttgact atctgcggca agcgggcctg
1440gtcaccggca tggccgatgg cgtggtcgcg agcaaccacg caggctacga gcagttcgag
1500tttcgcgtga aggaaacctc ggacgggcgc tatgccgtgc agtatcgccg caagggcggc
1560gacgatttcg aggcggtcaa ggtgatcggc aatgccgccg gtattccact gacggcggat
1620ggatccatcg acatgttcgc cattatgccg catctgtcca acttccgcga ctcggcgcgc
1680agttcggtga ccagcggcga ttcggtgacc gattacctgg cgcgcacgcg gcgggccgcc
1740agcgaggcca cgggcggtgt actctcaata attaatttcg aaaagcttgt acacctggat
1800cgcgaacgca tcgacttgtt gtggaaaatc gctcgcgccg gcgcccgttc cgcagtgggc
1860accgaggcgc gtcgccagtt ccgctacgac ggcgacatga atatcggcgt gatcaccgat
1920ttcgagctgg aagtgcgcaa tgcgctgaac aggcgggcgc acgccgtcgg cgcgcaggac
1980gtggtccagc atggcactga gcagaacaat cctttcccgg aggcagatga gaagattttc
2040gtcgtatcgg ccaccggtga aagccagatg ctcacgcgcg ggcaactgaa ggaatacatt
2100ggccagcagc gcggcgaggg ctatgtcttc tacgagaacc gtgcatacgg cgtggcgggg
2160aaaagcctgt tcgacgatgg gctgggagcc gcgcccggcg tgccgagcgg acgttcgaag
2220ttctcgccgg atgtactgga aacggtgccg gcgtcacccg gattgcggcg gccgtcgctg
2280ggcgcagtgg aacgccagga ttccggctat gacagccttg atggggtggg atcgcgatcg
2340ttctcgttgg gcgaggtgtc cgacatggcc gccgtggaag cggcggaact ggaaatgacc
2400cggcaagtct tgcacgccgg ggcgcggcag gacgatgccg agccgggcgt gagcggtgcg
2460tcggcgcact gggggcagcg ggcgctgcag ggcgcccagg cggtggcggc ggcgcagcgg
2520ctggttcatg ccattgccct gatgacgcaa ttcggccggg ccggttccac caacacgccg
2580caggaagcgg cctcgttgtc ggcggccgtg ttcggcttgg gcgaggccag cagcgccgtg
2640gccgaaaccg tgagcggttt tttccgcggg tcttcgcgct gggccggcgg tttcggcgtg
2700gctggcggcg cgatggcgct gggaggcggc atcgccgcgg ccgttggcgc cgggatgtcg
2760ttgaccgatg acgcgccggc cggacagaag gccgccgccg gagctccgat cgcgctgcag
2820ttaacgggtg gaacggtcga gctggcttct tccatcgcgt tggcgctggc cgcggcgcgc
2880ggcgtgacca gcggcttgca ggtggccggg gcgtcggccg gggcggctgc cggcgcattg
2940gccgcggcgc tcagtcccat ggagatctac ggcctggtgc agcaatcgca ctatgcggat
3000cagctggaca agctggcgca ggaatcgagc gcatacggtt acgagggcga cgccttgctg
3060gcccagctgt atcgcgacaa gacggccgcc gagggcgccg tcgccggcgt ctccgccgtc
3120ctgagcacgg tgggggcggc ggtgtcgatc gccgcggcgg ccagcgtggt aggggccccg
3180gtggcggtgg tcacttcctt gctgaccggg gctctcaacg gcatcctgcg cggcgtgcag
3240cagcccatca tcgaaaagct ggccaacgat tacgctcgca agatcgacga gctgggcggg
3300ccgcaagcgt acttcgagaa aaacctgcag gcgcgtcacg aacaactggc caattcggac
3360ggcctacgga aaatgctggc cgacctgcag gccggttgga acgccagcag cgtgatcggg
3420gtgcagacga cagagatctc caagtcggcg ctcgaactgg ccgccattac cggcaacgcg
3480gacaacctga aatccgtcga cgtgttcgtg gaccgcttcg tccagggcga gcgggtggcc
3540ggccagccgg tggtcctcga cgtcgccgcc ggcggcatcg atatcgccag ccgcaagggc
3600gagcggccgg cgctgacgtt catcacgccg ctggccgcgc caggagaaga gcagcgccgg
3660cgcacgaaaa cgggcagatc tgaattcacc acattcgtcg agatcgtggg caagcaggac
3720cgctggcgca tccgggacgg cgcggccgac accaccatcg atctggccaa ggtggtgtcg
3780caactggtcg acgccaatgg cgtgctcaag cacagcatca aactggatgt gatcggcgga
3840gatggcgatg acgtcgtgct tgccaatgct tcgcgcatcc attatgacgg cggcgcgggc
3900accaacacgg tcagctatgc cgccctgggt cgacaggatt ccattaccgt gtccgccgac
3960ggggaacgtt tcaacgtgcg caagcagttg aacaacgcca acgtgtatcg cgaaggcgtg
4020gctacccaga caaccgccta cggcaagcgc acggagaatg tccaataccg ccatgtcgag
4080ctggcccgtg tcgggcaagt ggtggaggtc gacacgctcg agcatgtgca gcacatcatc
4140ggcggggccg gcaacgattc gatcaccggc aatgcgcacg acaacttcct agccggcggg
4200tcgggcgacg acaggctgga tggcggcgcc ggcaacgaca ccctggttgg cggcgagggc
4260caaaacacgg tcatcggcgg cgccggcgac gacgtattcc tgcaggacct gggggtatgg
4320agcaaccagc tcgatggcgg cgcgggcgtc gataccgtga agtacaacgt gcaccagcct
4380tccgaggagc gcctcgaacg catgggcgac acgggcatcc atgccgatct tcaaaagggc
4440acggtcgaga agtggccggc cctgaacctg ttcagcgtcg accatgtcaa gaatatcgag
4500aatctgcacg gctcccgcct aaacgaccgc atcgccggcg acgaccagga caacgagctc
4560tggggccacg atggcaacga cacgatacgc ggccggggcg gcgacgacat cctgcgcggc
4620ggcctgggcc tggacacgct gtatggcgag gacggcaacg acatcttcct gcaggacgac
4680gagaccgtca gcgatgacat cgacggcggc gcggggctgg acaccgtcga ctactccgcc
4740atgatccatc caggcaggat cgttgcgccg catgaatacg gcttcgggat cgaggcggac
4800ctgtccaggg aatgggtgcg caaggcgtcc gcgctgggcg tggactatta cgataatgtc
4860cgcaatgtcg aaaacgtcat cggtacgagc atgaaggatg tgctcatcgg cgacgcgcaa
4920gccaataccc tgatgggcca gggcggcgac gataccgtgc gcggcggcga cggcgatgat
4980ctgctgttcg gcggcgacgg caacgacatg ctgtatggcg acgccggcaa cgacaccctc
5040tacggggggc tgggcgacga tacccttgaa ggcggcgcgg gcaacgattg gttcggccag
5100acgcaggcgc gcgagcatga cgtgctgcgc ggcggagatg gggtggatac cgtcgattac
5160agccagaccg gcgcgcatgc cggcattgcc gcgggtcgca tcgggctggg catcctggct
5220gacctgggcg ccggccgcgt cgacaagctg ggcgaggccg gcagcagcgc ctacgatacg
5280gtttccggta tcgagaacgt ggtgggcacg gaactggccg accgcatcac gggcgatgcg
5340caggccaacg tgctgcgcgg cgcgggtggc gccgacgtgc ttgcgggcgg cgagggcgac
5400gatgtgctgc tgggcggcga cggcgacgac cagctgtcgg gcgacgccgg acgcgatcgc
5460ttgtacggcg aagccggtga cgactggttc ttccaggatg ccgccaatgc cggcaatctg
5520ctcgacggcg gcgacggccg cgataccgtg gatttcagcg gcccgggccg gggcctcgac
5580gccggcgcaa agggcgtatt cctgagcttg ggcaaggggt tcgccagcct gatggacgaa
5640cccgaaacca gcaacgtgtt gcgcaatatc gagaacgccg tgggcagcgc gcgtgatgac
5700gtgctgatcg gcgacgcagg cgccaacgtc ctcaatggcc tggcgggcaa cgacgtgctg
5760tccggcggcg ctggcgacga tgtgctgctg ggcgacgagg gctcggacct gctcagcggc
5820gatgcgggca acgacgatct gttcggcggg cagggcgatg atacttatct gttcggggtc
5880gggtacgggc acgacacgat ctacgaatcg ggcggcggcc atgacaccat ccgcatcaac
5940gcgggggcgg accagctgtg gttcgcgcgc cagggcaacg acctggagat ccgcattctc
6000ggcaccgacg atgcacttac cgtgcacgac tggtatcgcg acgccgatca ccgggtggaa
6060atcatccatg ccgccaacca ggcggtagac caggcaggca tcgaaaagct ggtcgaggca
6120atggcgcagt atccggaccc cggcgcggcg gcggctgccc cgccggcggc gcgcgtgccg
6180gacacgctga tgcagtccct ggctgtcaac tggcgctgaa gcgccgtgaa tcacggcccg
6240cctgcctcgc gcggcggcgc cgtctctttg cgttcttctc cgaggtattt cccatcatga
6300attcactggc cgtcgtttta caacgtcgtg actgggaaaa ccctggcgtt acccaactta
6360atcgccttgc agcacatccc cctttcgcca gctggcgtaa tagcgaagag gcccgcaccg
6420atcgcccttc ccaacagttg cgcagcctga atggcgaatg ggaaattgta aacgttaata
6480ttttgttaat attttgttaa aattcgcgtt aaatttttgt taaatcagct cattttttaa
6540ccaataggcc gaaatcggca aaatccctta taaatcaaaa gaatagaccg agatagggtt
6600gagtgttgtt ccagtttgga acaagagtcc actattaaag aacgtggact ccaacgtcaa
6660agggcgaaaa accgtctatc agggcgatgg cccactacgt gaaccatcac cctaatcaag
6720ttttttgggg tcgaggtgcc gtaaagcact aaatcggaac cctaaaggga tgccccgatt
6780tagagcttga cggggaaagc cggcgaacgt ggcgagaaag gaagggaaga aagcgaaagg
6840agcgggcgct agggcgctgg caagtgtagc ggtcacgctg cgcgtaacca ccacacccgc
6900cgcgcttaat gcgccgctac agggcgcgtc aggtggcact tttcggggaa atgtgcgcgg
6960aacccctatt tgtttatttt tctaaataca ttcaaatatg tatccgctca tgagacaata
7020accctgataa atgcttcaat aatattgaaa aaggaagagt atgagtattc aacatttccg
7080tgtcgccctt attccctttt ttgcggcatt ttgccttcct gtttttgctc acccagaaac
7140gctggtgaaa gtaaaagatg ctgaagatca gttgggtgca cgagtgggtt acatcgaact
7200ggatctcaac agcggtaaga tccttgagag ttttcgcccc gaagaacgtt ttccaatgat
7260gagcactttt aaagttctgc tatgtggcgc ggtattatcc cgtattgacg ccgggcaaga
7320gcaactcggt cgccgcatac actattctca gaatgacttg gttgagtact caccagtcac
7380agaaaagcat cttacggatg gcatgacagt aagagaatta tgcagtgctg ccataaccat
7440gagtgataac actgcggcca acttacttct gacaacgatc ggaggaccga aggagctaac
7500cgcttttttg cacaacatgg gggatcatgt aactcgcctt gatcgttggg aaccggagct
7560gaatgaagcc ataccaaacg acgagcgtga caccacgatg cctgtagcaa tggcaacaac
7620gttgcgcaaa ctattaactg gcgaactact tactctagct tcccggcaac aattaataga
7680ctggatggag gcggataaag ttgcaggacc acttctgcgc tcggcccttc cggctggctg
7740gtttattgct gataaatctg gagccggtga gcgtgggtct cgcggtatca ttgcagcact
7800ggggccagat ggtaagccct cccgtatcgt agttatctac acgacgggga gtcaggcaac
7860tatggatgaa cgaaatagac agatcgctga gataggtgcc tcactgatta agcattggta
7920actgtcagac caagtttact catatatact ttagattgat ttaaaacttc atttttaatt
7980taaaaggatc taggtgaaga tcctttttga taatctcatg accaaaatcc cttaacgtga
8040gttttcgttc cactgagcgt cagaccccgt agaaaagatc aaaggatctt cttgagatcc
8100tttttttctg cgcgtaatct gctgcttgca aacaaaaaaa ccaccgctac cagcggtggt
8160ttgtttgccg gatcaagagc taccaactct ttttccgaag gtaactggct tcagcagagc
8220gcagatacca aatactgtcc ttctagtgta gccgtagtta ggccaccact tcaagaactc
8280tgtagcaccg cctacatacc tcgctctgct aatcctgtta ccagtggctg ctgccagtgg
8340cgataagtcg tgtcttaccg ggttggactc aagacgatag ttaccggata aggcgcagcg
8400gtcgggctga acggggggtt cgtgcacaca gcccagcttg gagcgaacga cctacaccga
8460actgagatac ctacagcgtg agctatgaga aagcgccacg cttcccgaag ggagaaaggc
8520ggacaggtat ccggtaagcg gcagggtcgg aacaggagag cgcacgaggg agcttccagg
8580gggaaacgcc tggtatcttt atagtcctgt cgggtttcgc cacctctgac ttgagcgtcg
8640atttttgtga tgctcgtcag gggggcggag cctatggaaa aacgccagca acgcggcctt
8700tttacggttc ctggcctttt gctggccttt tgctcacatg ttctttcctg cgttatcccc
8760tgattctgtg gataaccgta ttaccgcctt tgagtgagct gataccgctc gccgcagccg
8820aacgaccgag cgcagcgagt cagtgagcga ggaag
885571706PRTBordetella parapertussis 7Met Gln Gln Ser His Gln Ala Gly Tyr
Ala Asn Ala Ala Asp Arg Glu 1 5 10
15 Ser Gly Ile Pro Ala Ala Val Leu Asp Gly Ile Lys Ala Val
Ala Lys 20 25 30
Glu Lys Asn Ala Thr Leu Met Phe Arg Leu Val Asn Pro His Ser Thr
35 40 45 Ser Leu Ile Ala
Glu Gly Val Ala Thr Lys Gly Leu Gly Val His Ala 50
55 60 Lys Ser Ser Asp Trp Gly Leu Gln
Ala Gly Tyr Ile Pro Val Asn Pro 65 70
75 80 Asn Leu Ser Lys Leu Phe Gly Arg Ala Pro Glu Val
Ile Ala Arg Ala 85 90
95 Asp Asn Asp Val Asn Ser Ser Leu Ala His Gly His Thr Ala Val Asp
100 105 110 Leu Thr Leu
Ser Lys Glu Arg Leu Asp Tyr Leu Arg Gln Ala Gly Leu 115
120 125 Val Thr Gly Met Ala Asp Gly Val
Val Ala Ser Asn His Ala Gly Tyr 130 135
140 Glu Gln Phe Glu Phe Arg Val Lys Glu Thr Ser Asp Gly
Arg Tyr Ala 145 150 155
160 Val Gln Tyr Arg Arg Lys Gly Gly Asp Asp Phe Glu Ala Val Lys Val
165 170 175 Ile Gly Asn Ala
Ala Gly Ile Pro Leu Thr Ala Asp Ile Asp Met Phe 180
185 190 Ala Ile Met Pro His Leu Ser Asn Phe
Arg Asp Ser Ala Arg Ser Ser 195 200
205 Val Thr Ser Gly Asp Ser Val Thr Asp Tyr Leu Ala Arg Thr
Arg Arg 210 215 220
Ala Ala Ser Glu Ala Thr Gly Gly Leu Asp Arg Glu Arg Ile Asp Leu 225
230 235 240 Leu Trp Lys Ile Ala
Arg Ala Gly Ala Arg Ser Ala Val Gly Thr Glu 245
250 255 Ala Arg Arg Gln Phe Arg Tyr Asp Gly Asp
Met Asn Ile Gly Val Ile 260 265
270 Thr Asp Phe Glu Leu Glu Val Arg Asn Ala Leu Asn Arg Arg Ala
His 275 280 285 Ala
Val Gly Ala Gln Asp Val Val Gln His Gly Thr Glu Gln Asn Asn 290
295 300 Pro Phe Pro Glu Ala Asp
Glu Lys Ile Phe Val Val Ser Ala Thr Gly 305 310
315 320 Glu Ser Gln Met Leu Thr Arg Gly Gln Leu Lys
Glu Tyr Ile Gly Gln 325 330
335 Gln Arg Gly Glu Gly Tyr Val Phe Tyr Glu Asn Arg Ala Tyr Gly Val
340 345 350 Ala Gly
Lys Ser Leu Phe Asp Asp Gly Leu Gly Ala Ala Pro Gly Val 355
360 365 Pro Gly Gly Arg Ser Lys Ser
Ser Pro Asp Val Leu Glu Thr Val Pro 370 375
380 Ala Ser Pro Gly Leu Arg Arg Pro Ser Leu Gly Ala
Val Glu Arg Gln 385 390 395
400 Asp Ser Gly Tyr Asp Ser Leu Asp Gly Val Gly Ser Arg Ser Phe Ser
405 410 415 Leu Gly Glu
Val Ser Asp Met Ala Ala Val Glu Ala Ala Glu Leu Glu 420
425 430 Met Thr Arg Gln Val Leu His Ala
Gly Ala Arg Gln Asp Asp Ala Glu 435 440
445 Pro Gly Val Ser Gly Ala Ser Ala His Trp Gly Gln Arg
Ala Leu Gln 450 455 460
Gly Ala Gln Ala Val Ala Ala Ala Gln Arg Leu Val His Ala Ile Ala 465
470 475 480 Leu Met Thr Gln
Phe Gly Arg Ala Gly Ser Thr Asn Thr Pro Gln Glu 485
490 495 Ala Ala Ser Leu Ser Ala Ala Val Phe
Gly Leu Gly Glu Ala Ser Ser 500 505
510 Ala Val Ala Glu Thr Val Ser Gly Phe Phe Arg Gly Ser Ser
Arg Trp 515 520 525
Ala Gly Gly Phe Gly Val Ala Gly Gly Ala Met Ala Leu Gly Gly Gly 530
535 540 Ile Ala Ala Ala Val
Gly Ala Gly Met Ser Leu Thr Asp Asp Ala Pro 545 550
555 560 Ala Gly Gln Lys Ala Ala Val Gly Ala Glu
Ile Ala Leu Gln Leu Thr 565 570
575 Gly Gly Thr Val Glu Leu Ala Ser Ser Ile Ala Leu Ala Leu Ala
Ala 580 585 590 Ala
Arg Gly Val Thr Ser Gly Leu Gln Val Ala Gly Ala Ser Ala Gly 595
600 605 Ala Ala Ala Gly Ala Leu
Ala Ala Ala Leu Ser Pro Met Glu Ile Tyr 610 615
620 Gly Leu Val Gln Gln Ser His Tyr Ala Asp Gln
Leu Asp Lys Leu Ala 625 630 635
640 Gln Glu Ser Ser Ala Tyr Gly Tyr Glu Gly Asp Ala Leu Leu Ala Gln
645 650 655 Leu Tyr
Arg Asp Lys Thr Ala Ala Glu Gly Ala Val Ala Gly Val Ser 660
665 670 Ala Val Leu Ser Thr Val Gly
Ala Ala Val Ser Ile Ala Ala Ala Ala 675 680
685 Ser Val Val Gly Ala Pro Val Ala Val Val Thr Ser
Leu Leu Thr Gly 690 695 700
Ala Leu Asn Gly Ile Leu Arg Gly Val Gln Gln Pro Ile Ile Glu Lys 705
710 715 720 Leu Ala Asn
Asp Tyr Ala Arg Lys Ile Asp Glu Leu Gly Gly Pro Gln 725
730 735 Ala Tyr Phe Glu Lys Asn Leu Gln
Ala Arg His Glu Gln Leu Ala Asn 740 745
750 Ser Asp Gly Leu Arg Lys Met Leu Ala Asp Leu Gln Ala
Gly Trp Asn 755 760 765
Ala Ser Ser Val Ile Gly Val Gln Thr Thr Glu Ile Ser Lys Ser Ala 770
775 780 Leu Glu Leu Ala
Ala Ile Thr Gly Asn Ala Asp Asn Leu Lys Ser Ala 785 790
795 800 Asp Val Phe Val Asp Arg Phe Ile Gln
Gly Glu Arg Val Ala Gly Gln 805 810
815 Pro Val Val Leu Asp Val Ala Ala Gly Gly Ile Asp Ile Ala
Ser Arg 820 825 830
Lys Gly Glu Arg Pro Ala Leu Thr Phe Ile Thr Pro Leu Ala Ala Pro
835 840 845 Gly Glu Glu Gln
Arg Arg Arg Thr Lys Thr Gly Lys Ser Glu Phe Thr 850
855 860 Thr Phe Val Glu Ile Val Gly Lys
Gln Asp Arg Trp Arg Ile Arg Asp 865 870
875 880 Gly Ala Ala Asp Thr Thr Ile Asp Leu Ala Lys Val
Val Ser Gln Leu 885 890
895 Val Asp Ala Asn Gly Val Leu Lys His Ser Ile Lys Leu Glu Val Ile
900 905 910 Gly Gly Asp
Gly Asp Asp Val Val Leu Ala Asn Ala Ser Arg Ile His 915
920 925 Tyr Asp Gly Gly Ala Gly Thr Asn
Thr Val Ser Tyr Ala Ala Leu Gly 930 935
940 Arg Gln Asp Ser Ile Thr Val Ser Ala Asp Gly Glu Arg
Phe Asn Val 945 950 955
960 Arg Lys Gln Leu Asn Asn Ala Asn Val Tyr Arg Glu Gly Val Ala Thr
965 970 975 Gln Lys Thr Ala
Tyr Gly Lys Arg Thr Glu Asn Val Gln Tyr Arg His 980
985 990 Val Glu Leu Ala Arg Val Gly Gln
Leu Val Glu Val Asp Thr Leu Glu 995 1000
1005 His Val Gln His Ile Ile Gly Gly Ala Gly Asn
Asp Ser Ile Thr 1010 1015 1020
Gly Asn Ala His Asp Asn Phe Leu Ala Gly Gly Ala Gly Asp Asp
1025 1030 1035 Arg Leu Asp
Gly Gly Ala Gly Asn Asp Thr Leu Val Gly Gly Glu 1040
1045 1050 Gly His Asn Thr Val Val Gly Gly
Ala Gly Asp Asp Val Phe Leu 1055 1060
1065 Gln Asp Leu Gly Val Trp Ser Asn Gln Leu Asp Gly Gly
Ala Gly 1070 1075 1080
Val Asp Thr Val Lys Tyr Asn Val His Gln Pro Ser Glu Glu Arg 1085
1090 1095 Leu Glu Arg Met Gly
Asp Thr Gly Ile His Ala Asp Leu Gln Lys 1100 1105
1110 Gly Thr Val Glu Lys Trp Pro Ala Leu Asn
Leu Phe Ser Val Asp 1115 1120 1125
His Val Lys Asn Ile Glu Asn Leu His Gly Ser Ser Leu Asn Asp
1130 1135 1140 Ser Ile
Ala Gly Asp Asp Arg Asp Asn Glu Leu Trp Gly Asp Asp 1145
1150 1155 Gly Asn Asp Thr Ile His Gly
Arg Gly Gly Asp Asp Ile Leu Arg 1160 1165
1170 Gly Gly Leu Gly Leu Asp Thr Leu Tyr Gly Glu Asp
Gly Asn Asp 1175 1180 1185
Ile Phe Leu Gln Asp Asp Glu Thr Val Ser Asp Asp Ile Asp Gly 1190
1195 1200 Gly Ala Gly Leu Asp
Thr Val Asp Tyr Ser Ala Met Ile His Ala 1205 1210
1215 Gly Lys Ile Val Ala Pro His Glu Tyr Gly
Phe Gly Ile Glu Ala 1220 1225 1230
Asp Leu Ser Glu Gly Trp Val Arg Lys Ala Ala Arg Arg Gly Met
1235 1240 1245 Gly Tyr
Tyr Asp Ser Val Arg Ser Val Glu Asn Val Ile Gly Thr 1250
1255 1260 Ser Met Lys Asp Val Leu Ile
Gly Asp Ala Gln Ala Asn Thr Leu 1265 1270
1275 Met Gly Gln Gly Gly Asp Asp Thr Val Arg Gly Gly
Asp Gly Asp 1280 1285 1290
Asp Leu Leu Phe Gly Gly Asp Gly Asn Asp Met Leu Tyr Gly Asp 1295
1300 1305 Ala Gly Asn Asp Thr
Leu Tyr Gly Gly Leu Gly Asp Asp Thr Leu 1310 1315
1320 Glu Gly Gly Ala Gly Asn Asp Trp Phe Gly
Gln Thr Pro Ala Arg 1325 1330 1335
Glu His Asp Val Leu Arg Gly Gly Ala Gly Val Asp Thr Val Asp
1340 1345 1350 Tyr Ser
Gln Ala Gly Ala His Ala Gly Val Ala Thr Gly Arg Ile 1355
1360 1365 Gly Leu Gly Ile Leu Ala Asp
Leu Gly Ala Gly Arg Val Asp Lys 1370 1375
1380 Leu Gly Glu Ala Gly Ser Ser Ala Tyr Asp Thr Val
Ser Gly Ile 1385 1390 1395
Glu Asn Val Val Gly Thr Glu Leu Ala Asp Arg Ile Thr Gly Asp 1400
1405 1410 Ala Gln Ala Asn Val
Leu Arg Gly Ala Gly Gly Ala Asp Val Leu 1415 1420
1425 Ala Gly Gly Glu Gly Asp Asp Val Leu Leu
Gly Gly Glu Gly Asp 1430 1435 1440
Asp Gln Leu Ser Gly Asp Ala Gly Arg Asp Arg Leu Tyr Gly Glu
1445 1450 1455 Ala Gly
Asp Asp Trp Phe Phe Gln Asp Ala Ala Asn Ala Gly Asn 1460
1465 1470 Leu Leu Asp Gly Gly Asp Gly
Asn Asp Thr Val Asp Phe Ser Gly 1475 1480
1485 Pro Gly Arg Gly Leu Asp Ala Gly Ala Lys Gly Val
Phe Leu Ser 1490 1495 1500
Leu Gly Lys Gly Phe Ala Ser Leu Met Asp Glu Pro Glu Thr Ser 1505
1510 1515 Asn Val Leu Arg His
Ile Glu Asn Ala Val Gly Ser Val Arg Asp 1520 1525
1530 Asp Val Leu Ile Gly Asp Ala Gly Ala Asn
Val Leu Asn Gly Leu 1535 1540 1545
Ala Gly Asn Asp Val Leu Ser Gly Gly Ala Gly Asp Asp Val Leu
1550 1555 1560 Leu Gly
Asp Glu Gly Ser Asp Leu Leu Ser Gly Asp Ala Gly Asn 1565
1570 1575 Asp Asp Leu Phe Gly Gly Gln
Gly Asp Asp Thr Tyr Leu Phe Gly 1580 1585
1590 Ala Gly Tyr Gly His Asp Thr Ile Tyr Glu Ser Gly
Gly Gly His 1595 1600 1605
Asp Thr Ile Arg Ile Asn Ala Gly Ala Asp Gln Leu Trp Phe Ala 1610
1615 1620 Arg Gln Gly Asn Asp
Leu Glu Ile Arg Ile Leu Gly Thr Asp Asp 1625 1630
1635 Ala Leu Thr Val His Asp Trp Tyr Arg Asp
Ala Asp His Arg Val 1640 1645 1650
Glu Ala Ile His Ala Ala Asn Gln Ala Ile Asp Pro Ala Gly Ile
1655 1660 1665 Glu Lys
Leu Val Glu Ala Met Ala Gln Tyr Pro Asp Pro Gly Ala 1670
1675 1680 Ala Ala Ala Ala Pro Pro Ala
Ala Arg Val Pro Asp Thr Leu Met 1685 1690
1695 Gln Ser Leu Ala Val Asn Trp Arg 1700
1705 81706PRTBordetella hinzii 8Met Gln Gln Ser His Gln Ala
Gly Tyr Ala Asn Ala Ala Asp Arg Glu 1 5
10 15 Ser Gly Ile Pro Ala Ala Val Leu Asp Gly Ile
Lys Ala Val Ala Lys 20 25
30 Glu Lys Asn Ala Thr Leu Met Phe Arg Leu Val Asn Pro His Ser
Thr 35 40 45 Ser
Leu Ile Ala Glu Gly Val Ala Thr Lys Gly Leu Gly Val His Ala 50
55 60 Lys Ser Ser Asp Trp Gly
Leu Gln Ala Gly Tyr Ile Pro Val Asn Pro 65 70
75 80 Asn Leu Ser Lys Leu Phe Gly Arg Ala Pro Glu
Val Ile Ala Arg Ala 85 90
95 Asp Asn Asp Val Asn Ser Ser Leu Ala His Gly His Thr Ala Val Asp
100 105 110 Leu Thr
Leu Ser Lys Glu Arg Leu Asp Tyr Leu Arg Gln Ala Gly Leu 115
120 125 Val Thr Gly Met Ala Asp Gly
Val Val Ala Ser Asn His Ala Gly Tyr 130 135
140 Glu Gln Phe Glu Phe Arg Val Lys Glu Thr Ser Asp
Gly Arg Tyr Ala 145 150 155
160 Val Gln Tyr Arg Arg Lys Gly Gly Asp Asp Phe Glu Ala Val Lys Val
165 170 175 Ile Gly Asn
Ala Ala Gly Ile Pro Leu Thr Ala Asp Ile Asp Met Phe 180
185 190 Ala Ile Met Pro His Leu Ser Asn
Phe Arg Asp Ser Ala Arg Ser Ser 195 200
205 Val Thr Ser Gly Asp Ser Val Thr Asp Tyr Leu Ala Arg
Thr Arg Arg 210 215 220
Ala Ala Ser Glu Ala Thr Gly Gly Leu Asp Arg Glu Arg Ile Asp Leu 225
230 235 240 Leu Trp Lys Ile
Ala Arg Ala Gly Ala Arg Ser Ala Val Gly Thr Glu 245
250 255 Ala Arg Arg Gln Phe Arg Tyr Asp Gly
Asp Met Asn Ile Gly Val Ile 260 265
270 Thr Asp Phe Glu Leu Glu Val Arg Asn Ala Leu Asn Arg Arg
Ala His 275 280 285
Ala Val Gly Ala Gln Asp Val Val Gln His Gly Thr Glu Gln Asn Asn 290
295 300 Pro Phe Pro Glu Ala
Asp Glu Lys Ile Phe Val Val Ser Ala Thr Gly 305 310
315 320 Glu Ser Gln Met Leu Thr Arg Gly Gln Leu
Lys Glu Tyr Ile Gly Gln 325 330
335 Gln Arg Gly Glu Gly Tyr Val Phe Tyr Glu Asn Arg Ala Tyr Gly
Val 340 345 350 Ala
Gly Lys Ser Leu Phe Asp Asp Gly Leu Gly Ala Ala Pro Gly Val 355
360 365 Pro Ser Gly Arg Ser Lys
Phe Ser Pro Asp Val Leu Glu Thr Val Pro 370 375
380 Ala Ser Pro Gly Leu Arg Arg Pro Ser Leu Gly
Ala Val Glu Arg Gln 385 390 395
400 Asp Ser Gly Tyr Asp Ser Leu Asp Gly Val Gly Ser Arg Ser Phe Ser
405 410 415 Leu Gly
Glu Val Ser Asp Met Ala Ala Val Glu Ala Ala Glu Leu Glu 420
425 430 Met Thr Arg Gln Val Leu His
Ala Gly Ala Arg Gln Asp Asp Ala Glu 435 440
445 Pro Gly Val Ser Gly Ala Ser Ala His Trp Gly Gln
Arg Ala Leu Gln 450 455 460
Gly Ala Gln Ala Val Ala Ala Ala Gln Arg Leu Val His Ala Ile Ala 465
470 475 480 Leu Met Thr
Gln Phe Gly Arg Ala Gly Ser Thr Asn Thr Pro Gln Glu 485
490 495 Ala Ala Ser Leu Ser Ala Ala Val
Phe Gly Leu Gly Glu Ala Ser Ser 500 505
510 Ala Val Ala Glu Thr Val Ser Gly Phe Phe Arg Gly Ser
Ser Arg Trp 515 520 525
Ala Gly Gly Phe Gly Val Ala Gly Gly Ala Met Ala Leu Gly Gly Gly 530
535 540 Ile Ala Ala Ala
Val Gly Ala Gly Met Ser Leu Thr Asp Asp Ala Pro 545 550
555 560 Ala Gly Gln Lys Ala Ala Ala Gly Ala
Glu Ile Ala Leu Gln Leu Thr 565 570
575 Gly Gly Thr Val Glu Leu Ala Ser Ser Ile Ala Leu Ala Leu
Ala Ala 580 585 590
Ala Arg Gly Val Thr Ser Gly Leu Gln Val Ala Gly Ala Ser Ala Gly
595 600 605 Ala Ala Ala Gly
Ala Leu Ala Ala Ala Leu Ser Pro Met Glu Ile Tyr 610
615 620 Gly Leu Val Gln Gln Ser His Tyr
Ala Asp Gln Leu Asp Lys Leu Ala 625 630
635 640 Gln Glu Ser Ser Ala Tyr Gly Tyr Glu Gly Asp Ala
Leu Leu Ala Gln 645 650
655 Leu Tyr Arg Asp Lys Thr Ala Ala Glu Gly Ala Val Ala Gly Val Ser
660 665 670 Ala Val Leu
Ser Thr Val Gly Ala Ala Val Ser Ile Ala Ala Ala Ala 675
680 685 Ser Val Val Gly Ala Pro Val Ala
Val Val Thr Ser Leu Leu Thr Gly 690 695
700 Ala Leu Asn Gly Ile Leu Arg Gly Val Gln Gln Pro Ile
Ile Glu Lys 705 710 715
720 Leu Ala Asn Asp Tyr Ala Arg Lys Ile Asp Glu Leu Gly Gly Pro Gln
725 730 735 Ala Tyr Phe Glu
Lys Asn Leu Gln Ala Arg His Glu Gln Leu Ala Asn 740
745 750 Ser Asp Gly Leu Arg Lys Met Leu Ala
Asp Leu Gln Ala Gly Trp Asn 755 760
765 Ala Ser Ser Val Ile Gly Val Gln Thr Thr Glu Ile Ser Lys
Ser Ala 770 775 780
Leu Glu Leu Ala Ala Ile Thr Gly Asn Ala Asp Asn Leu Lys Ser Val 785
790 795 800 Asp Val Phe Val Asp
Arg Phe Val Gln Gly Glu Arg Val Ala Gly Gln 805
810 815 Pro Val Val Leu Asp Val Ala Ala Gly Gly
Ile Asp Ile Ala Ser Arg 820 825
830 Lys Gly Glu Arg Pro Ala Leu Thr Phe Ile Thr Pro Leu Ala Ala
Pro 835 840 845 Gly
Glu Glu Gln Arg Arg Arg Thr Lys Thr Gly Lys Ser Glu Phe Thr 850
855 860 Thr Phe Val Glu Ile Val
Gly Lys Gln Asp Arg Trp Arg Ile Arg Asp 865 870
875 880 Gly Ala Ala Asp Thr Thr Ile Asp Leu Ala Lys
Val Val Ser Gln Leu 885 890
895 Val Asp Ala Asn Gly Val Leu Lys His Ser Ile Lys Leu Asp Val Ile
900 905 910 Gly Gly
Asp Gly Asp Asp Val Val Leu Ala Asn Ala Ser Arg Ile His 915
920 925 Tyr Asp Gly Gly Ala Gly Thr
Asn Thr Val Ser Tyr Ala Ala Leu Gly 930 935
940 Arg Gln Asp Ser Ile Thr Val Ser Ala Asp Gly Glu
Arg Phe Asn Val 945 950 955
960 Arg Lys Gln Leu Asn Asn Ala Asn Val Tyr Arg Glu Gly Val Ala Thr
965 970 975 Gln Thr Thr
Ala Tyr Gly Lys Arg Thr Glu Asn Val Gln Tyr Arg His 980
985 990 Val Glu Leu Ala Arg Val Gly Gln
Leu Val Glu Val Asp Thr Leu Glu 995 1000
1005 His Val Gln His Ile Ile Gly Gly Ala Gly Asn
Asp Ser Ile Thr 1010 1015 1020
Gly Asn Ala His Asp Asn Phe Leu Ala Gly Gly Ser Gly Asp Asp
1025 1030 1035 Arg Leu Asp
Gly Gly Ala Gly Asn Asp Thr Leu Val Gly Gly Glu 1040
1045 1050 Gly Gln Asn Thr Val Ile Gly Gly
Ala Gly Asp Asp Val Phe Leu 1055 1060
1065 Gln Asp Leu Gly Val Trp Ser Asn Gln Leu Asp Gly Gly
Ala Gly 1070 1075 1080
Val Asp Thr Val Lys Tyr Asn Val His Gln Pro Ser Glu Glu Arg 1085
1090 1095 Leu Glu Arg Met Gly
Asp Thr Gly Ile His Ala Asp Leu Gln Lys 1100 1105
1110 Gly Thr Val Glu Lys Trp Pro Ala Leu Asn
Leu Phe Ser Val Asp 1115 1120 1125
His Val Lys Asn Ile Glu Asn Leu His Gly Ser Arg Leu Asn Asp
1130 1135 1140 Arg Ile
Ala Gly Asp Asp Gln Asp Asn Glu Leu Trp Gly His Asp 1145
1150 1155 Gly Asn Asp Thr Ile Arg Gly
Arg Gly Gly Asp Asp Ile Leu Arg 1160 1165
1170 Gly Gly Leu Gly Leu Asp Thr Leu Tyr Gly Glu Asp
Gly Asn Asp 1175 1180 1185
Ile Phe Leu Gln Asp Asp Glu Thr Val Ser Asp Asp Ile Asp Gly 1190
1195 1200 Gly Ala Gly Leu Asp
Thr Val Asp Tyr Ser Ala Met Ile His Pro 1205 1210
1215 Gly Arg Ile Val Ala Pro His Glu Tyr Gly
Phe Gly Ile Glu Ala 1220 1225 1230
Asp Leu Ser Arg Glu Trp Val Arg Lys Ala Ser Ala Leu Gly Val
1235 1240 1245 Asp Tyr
Tyr Asp Asn Val Arg Asn Val Glu Asn Val Ile Gly Thr 1250
1255 1260 Ser Met Lys Asp Val Leu Ile
Gly Asp Ala Gln Ala Asn Thr Leu 1265 1270
1275 Met Gly Gln Gly Gly Asp Asp Thr Val Arg Gly Gly
Asp Gly Asp 1280 1285 1290
Asp Leu Leu Phe Gly Gly Asp Gly Asn Asp Met Leu Tyr Gly Asp 1295
1300 1305 Ala Gly Asn Asp Thr
Leu Tyr Gly Gly Leu Gly Asp Asp Thr Leu 1310 1315
1320 Glu Gly Gly Ala Gly Asn Asp Trp Phe Gly
Gln Thr Gln Ala Arg 1325 1330 1335
Glu His Asp Val Leu Arg Gly Gly Asp Gly Val Asp Thr Val Asp
1340 1345 1350 Tyr Ser
Gln Thr Gly Ala His Ala Gly Ile Ala Ala Gly Arg Ile 1355
1360 1365 Gly Leu Gly Ile Leu Ala Asp
Leu Gly Ala Gly Arg Val Asp Lys 1370 1375
1380 Leu Gly Glu Ala Gly Ser Ser Ala Tyr Asp Thr Val
Ser Gly Ile 1385 1390 1395
Glu Asn Val Val Gly Thr Glu Leu Ala Asp Arg Ile Thr Gly Asp 1400
1405 1410 Ala Gln Ala Asn Val
Leu Arg Gly Ala Gly Gly Ala Asp Val Leu 1415 1420
1425 Ala Gly Gly Glu Gly Asp Asp Val Leu Leu
Gly Gly Asp Gly Asp 1430 1435 1440
Asp Gln Leu Ser Gly Asp Ala Gly Arg Asp Arg Leu Tyr Gly Glu
1445 1450 1455 Ala Gly
Asp Asp Trp Phe Phe Gln Asp Ala Ala Asn Ala Gly Asn 1460
1465 1470 Leu Leu Asp Gly Gly Asp Gly
Arg Asp Thr Val Asp Phe Ser Gly 1475 1480
1485 Pro Gly Arg Gly Leu Asp Ala Gly Ala Lys Gly Val
Phe Leu Ser 1490 1495 1500
Leu Gly Lys Gly Phe Ala Ser Leu Met Asp Glu Pro Glu Thr Ser 1505
1510 1515 Asn Val Leu Arg Asn
Ile Glu Asn Ala Val Gly Ser Ala Arg Asp 1520 1525
1530 Asp Val Leu Ile Gly Asp Ala Gly Ala Asn
Val Leu Asn Gly Leu 1535 1540 1545
Ala Gly Asn Asp Val Leu Ser Gly Gly Ala Gly Asp Asp Val Leu
1550 1555 1560 Leu Gly
Asp Glu Gly Ser Asp Leu Leu Ser Gly Asp Ala Gly Asn 1565
1570 1575 Asp Asp Leu Phe Gly Gly Gln
Gly Asp Asp Thr Tyr Leu Phe Gly 1580 1585
1590 Val Gly Tyr Gly His Asp Thr Ile Tyr Glu Ser Gly
Gly Gly His 1595 1600 1605
Asp Thr Ile Arg Ile Asn Ala Gly Ala Asp Gln Leu Trp Phe Ala 1610
1615 1620 Arg Gln Gly Asn Asp
Leu Glu Ile Arg Ile Leu Gly Thr Asp Asp 1625 1630
1635 Ala Leu Thr Val His Asp Trp Tyr Arg Asp
Ala Asp His Arg Val 1640 1645 1650
Glu Ile Ile His Ala Ala Asn Gln Ala Val Asp Gln Ala Gly Ile
1655 1660 1665 Glu Lys
Leu Val Glu Ala Met Ala Gln Tyr Pro Asp Pro Gly Ala 1670
1675 1680 Ala Ala Ala Ala Pro Pro Ala
Ala Arg Val Pro Asp Thr Leu Met 1685 1690
1695 Gln Ser Leu Ala Val Asn Trp Arg 1700
1705 91705PRTBordetella bronchiseptica 9Met Gln Gln Ser His
Gln Ala Gly Tyr Ala Asn Ala Ala Asp Arg Glu 1 5
10 15 Ser Gly Ile Pro Ala Ala Val Leu Asp Gly
Ile Lys Ala Val Ala Lys 20 25
30 Glu Lys Asn Ala Thr Leu Met Phe Arg Leu Val Asn Pro His Ser
Thr 35 40 45 Ser
Leu Ile Ala Glu Gly Val Ala Thr Lys Gly Leu Gly Val His Ala 50
55 60 Lys Ser Ser Asp Trp Gly
Leu Gln Ala Gly Tyr Ile Pro Val Asn Pro 65 70
75 80 Asn Leu Ser Lys Leu Phe Gly Arg Ala Pro Glu
Val Ile Ala Arg Ala 85 90
95 Asp Asn Asp Val Asn Ser Ser Leu Ala His Gly His Thr Ala Val Asp
100 105 110 Leu Thr
Leu Ser Lys Glu Arg Leu Asp Tyr Leu Arg Gln Ala Gly Leu 115
120 125 Val Thr Gly Met Ala Asp Gly
Val Val Ala Ser Asn His Ala Gly Tyr 130 135
140 Glu Gln Phe Glu Phe Arg Val Lys Glu Thr Ser Asp
Gly Arg Tyr Ala 145 150 155
160 Val Gln Tyr Arg Arg Lys Gly Gly Asp Asp Phe Glu Ala Val Lys Val
165 170 175 Ile Gly Asn
Ala Ala Gly Ile Pro Leu Thr Ala Asp Ile Asp Met Phe 180
185 190 Ala Ile Met Pro His Leu Ser Asn
Phe Arg Asp Ser Ala Arg Ser Ser 195 200
205 Val Thr Ser Gly Asp Ser Val Thr Asp Tyr Leu Ala Arg
Thr Arg Arg 210 215 220
Ala Ala Ser Glu Ala Thr Gly Gly Leu Asp Arg Glu Arg Ile Asp Leu 225
230 235 240 Leu Trp Lys Ile
Ala Arg Ala Gly Ala Arg Ser Ala Val Gly Thr Glu 245
250 255 Ala Arg Arg Gln Phe Arg Tyr Asp Gly
Asp Met Asn Ile Gly Val Ile 260 265
270 Thr Asp Phe Glu Leu Glu Val Arg Asn Ala Leu Asn Arg Arg
Ala His 275 280 285
Ala Val Gly Arg Gln Asp Val Val Gln His Gly Thr Glu Gln Asn Asn 290
295 300 Pro Phe Pro Glu Ala
Asp Glu Lys Ile Phe Val Val Ser Ala Thr Gly 305 310
315 320 Glu Ser Gln Met Leu Thr Arg Gly Gln Leu
Lys Glu Tyr Ile Gly Gln 325 330
335 Gln Arg Gly Glu Gly Tyr Val Phe Tyr Glu Asn Arg Ala Tyr Gly
Val 340 345 350 Ala
Gly Lys Ser Leu Phe Asp Asp Gly Leu Gly Ala Ala Pro Gly Val 355
360 365 Pro Gly Arg Arg Ser Lys
Ser Ser Pro Asp Val Leu Glu Thr Val Pro 370 375
380 Ala Ser Pro Gly Leu Arg Arg Pro Ser Leu Gly
Ala Val Glu Arg Gln 385 390 395
400 Asp Ser Gly Tyr Asp Ser Leu Asp Gly Val Gly Ser Arg Ser Phe Ser
405 410 415 Leu Gly
Glu Val Ser Asp Met Ala Ala Val Glu Ala Ala Glu Leu Glu 420
425 430 Met Thr Arg Gln Val Leu His
Ala Gly Ala Arg Gln Asp Asp Ala Glu 435 440
445 Pro Gly Val Ser Gly Ala Ser Ala His Trp Gly Gln
Arg Ala Leu Gln 450 455 460
Gly Ala Gln Ala Val Ala Ala Ala Gln Arg Leu Val His Ala Ile Ala 465
470 475 480 Leu Met Thr
Gln Phe Gly Arg Ala Gly Ser Thr Asn Thr Pro Gln Glu 485
490 495 Ala Ala Ser Leu Ser Ala Ala Val
Phe Gly Leu Gly Glu Ala Ser Ser 500 505
510 Ala Val Ala Glu Thr Val Ser Gly Phe Phe Arg Gly Ser
Ser Arg Trp 515 520 525
Ala Gly Gly Phe Gly Val Ala Gly Gly Ala Met Ala Leu Gly Gly Gly 530
535 540 Ile Gly Ala Val
Gly Ala Gly Met Ser Leu Thr Asp Asp Ala Pro Ala 545 550
555 560 Gly Gln Lys Ala Ala Ala Gly Ala Glu
Ile Ala Leu Gln Leu Thr Gly 565 570
575 Gly Thr Val Glu Leu Ala Ser Ser Ile Ala Leu Ala Leu Ala
Ala Ala 580 585 590
Arg Gly Val Thr Ser Gly Leu Gln Val Ala Gly Ala Ser Ala Gly Ala
595 600 605 Ala Ala Gly Ala
Leu Ala Ala Ala Leu Ser Pro Met Glu Ile Tyr Gly 610
615 620 Leu Val Gln Gln Ser His Tyr Ala
Asp Gln Leu Asp Lys Leu Ala Gln 625 630
635 640 Glu Ser Ser Ala Tyr Gly Tyr Glu Gly Asp Ala Leu
Leu Ala Gln Leu 645 650
655 Tyr Arg Asp Lys Thr Ala Ala Glu Gly Ala Val Ala Gly Val Ser Ala
660 665 670 Val Leu Ser
Thr Val Gly Ala Ala Val Ser Ile Ala Ala Ala Ala Ser 675
680 685 Val Val Gly Ala Pro Val Ala Val
Val Thr Ser Leu Leu Thr Gly Ala 690 695
700 Leu Asn Gly Ile Leu Arg Gly Val Gln Gln Pro Ile Ile
Glu Lys Leu 705 710 715
720 Ala Asn Asp Tyr Ala Arg Lys Ile Asp Glu Leu Gly Gly Pro Gln Ala
725 730 735 Tyr Phe Glu Lys
Asn Leu Gln Ala Arg His Glu Gln Leu Ala Asn Ser 740
745 750 Asp Gly Leu Arg Lys Met Leu Ala Asp
Leu Gln Ala Gly Trp Asn Ala 755 760
765 Ser Ser Val Ile Gly Val Gln Thr Thr Glu Ile Ser Lys Ser
Ala Leu 770 775 780
Glu Leu Ala Ala Ile Thr Gly Asn Ala Asp Asn Leu Lys Ser Ala Asp 785
790 795 800 Val Phe Val Asp Arg
Phe Ile Gln Gly Glu Arg Val Ala Gly Gln Pro 805
810 815 Val Val Leu Asp Val Ala Ala Gly Gly Ile
Asp Ile Ala Ser Arg Lys 820 825
830 Gly Glu Arg Pro Ala Leu Thr Phe Ile Thr Pro Leu Ala Ala Pro
Gly 835 840 845 Glu
Glu Gln Arg Arg Arg Thr Lys Thr Gly Lys Ser Glu Phe Thr Thr 850
855 860 Phe Val Glu Ile Val Gly
Lys Gln Asp Arg Trp Arg Ile Arg Asp Gly 865 870
875 880 Ala Ala Asp Thr Thr Ile Asp Leu Ala Lys Val
Val Ser Gln Leu Val 885 890
895 Asp Ala Asn Gly Val Leu Lys His Ser Ile Lys Leu Glu Val Ile Gly
900 905 910 Gly Asp
Gly Asp Asp Val Val Leu Ala Asn Ala Ser Arg Ile His Tyr 915
920 925 Asp Gly Gly Ala Gly Thr Asn
Thr Val Ser Tyr Ala Ala Leu Gly Arg 930 935
940 Gln Asp Ser Ile Thr Val Ser Ala Asp Gly Glu Arg
Phe Asn Val Arg 945 950 955
960 Lys Gln Leu Asn Asn Ala Asn Val Tyr Arg Glu Gly Val Ala Thr Gln
965 970 975 Lys Thr Ala
Tyr Gly Lys Arg Thr Glu Asn Val Gln Tyr Arg His Val 980
985 990 Glu Leu Ala Arg Val Gly Gln Leu
Val Glu Val Asp Thr Leu Glu His 995 1000
1005 Val Gln His Ile Ile Gly Gly Ala Gly Asn Asp
Ser Ile Thr Gly 1010 1015 1020
Asn Ala His Asp Asn Phe Leu Ala Gly Gly Ala Gly Asp Asp Arg
1025 1030 1035 Leu Asp Gly
Gly Ala Gly Asn Asp Thr Leu Val Gly Gly Glu Gly 1040
1045 1050 His Asn Thr Val Val Gly Gly Ala
Gly Asp Asp Val Phe Leu Gln 1055 1060
1065 Asp Leu Gly Val Trp Ser Asn Gln Leu Asp Gly Gly Ala
Gly Val 1070 1075 1080
Asp Thr Val Lys Tyr Asn Val His Gln Pro Ser Glu Glu Arg Leu 1085
1090 1095 Glu Arg Met Gly Asp
Thr Gly Ile His Ala Asp Leu Gln Lys Gly 1100 1105
1110 Thr Val Glu Lys Trp Pro Ala Leu Asn Leu
Phe Ser Val Asp His 1115 1120 1125
Val Lys Asn Ile Glu Asn Leu His Gly Ser Ser Leu Asn Asp Ser
1130 1135 1140 Ile Ala
Gly Asp Asp Arg Asp Asn Glu Leu Trp Gly Asp Asp Gly 1145
1150 1155 Asn Asp Thr Ile His Gly Arg
Gly Gly Asp Asp Ile Leu Arg Gly 1160 1165
1170 Gly Leu Gly Leu Asp Thr Leu Tyr Gly Glu Asp Gly
Asn Asp Ile 1175 1180 1185
Phe Leu Gln Asp Asp Glu Thr Val Ser Asp Asp Ile Asp Gly Gly 1190
1195 1200 Ala Gly Leu Asp Thr
Val Asp Tyr Ser Ala Met Ile His Ala Gly 1205 1210
1215 Lys Ile Val Ala Pro His Glu Tyr Gly Phe
Gly Ile Glu Ala Asp 1220 1225 1230
Leu Ser Glu Gly Trp Val Arg Lys Ala Ala Arg Arg Gly Met Asp
1235 1240 1245 Tyr Tyr
Asp Ser Val Arg Ser Val Glu Asn Val Ile Gly Thr Ser 1250
1255 1260 Met Lys Asp Val Leu Ile Gly
Asp Ala Gln Ala Asn Thr Leu Met 1265 1270
1275 Gly Gln Gly Gly Asp Asp Thr Val Arg Gly Gly Asp
Gly Asp Asp 1280 1285 1290
Leu Leu Phe Gly Gly Asp Gly Asn Asp Met Leu Tyr Gly Asp Ala 1295
1300 1305 Gly Asn Asp Thr Leu
Tyr Gly Gly Leu Gly Asp Asp Thr Leu Glu 1310 1315
1320 Gly Gly Ala Gly Asn Asp Trp Phe Gly Gln
Thr Pro Ala Arg Glu 1325 1330 1335
His Asp Val Leu Arg Gly Gly Ala Gly Val Asp Thr Val Asp Tyr
1340 1345 1350 Ser Gln
Ala Gly Ala His Ala Gly Val Ala Thr Gly Arg Ile Gly 1355
1360 1365 Leu Gly Ile Leu Ala Asp Leu
Gly Ala Gly Arg Val Asp Lys Leu 1370 1375
1380 Gly Glu Ala Gly Ser Ser Ala Tyr Asp Thr Val Ser
Gly Ile Glu 1385 1390 1395
Asn Val Val Gly Thr Glu Leu Ala Asp Arg Ile Thr Gly Asp Ala 1400
1405 1410 Gln Ala Asn Val Leu
Arg Gly Ala Gly Gly Ala Asp Val Leu Ala 1415 1420
1425 Gly Gly Glu Gly Asp Asp Val Leu Leu Gly
Gly Asp Gly Asp Asp 1430 1435 1440
Gln Leu Ser Gly Asp Ala Gly Arg Asp Arg Leu Tyr Gly Glu Ala
1445 1450 1455 Gly Asp
Asp Trp Phe Phe Gln Asp Ala Ala Asn Ala Gly Asn Leu 1460
1465 1470 Leu Asp Gly Gly Asp Gly Asn
Asp Thr Val Asp Phe Ser Gly Pro 1475 1480
1485 Gly Arg Gly Leu Asp Ala Gly Ala Lys Gly Val Phe
Leu Ser Leu 1490 1495 1500
Gly Lys Gly Phe Ala Ser Leu Met Asp Glu Pro Glu Thr Ser Asn 1505
1510 1515 Val Leu Arg His Ile
Glu Asn Ala Val Gly Ser Val Arg Asp Asp 1520 1525
1530 Val Leu Ile Gly Asp Ala Gly Ala Asn Val
Leu Asn Gly Leu Ala 1535 1540 1545
Gly Asn Asp Val Leu Ser Gly Gly Ala Gly Asp Asp Val Leu Leu
1550 1555 1560 Gly Asp
Glu Gly Ser Asp Leu Leu Ser Gly Asp Ala Gly Asn Asp 1565
1570 1575 Asp Leu Phe Gly Gly Gln Gly
Asp Asp Thr Tyr Leu Phe Gly Ala 1580 1585
1590 Gly Tyr Gly His Asp Thr Ile Tyr Glu Ser Gly Gly
Gly His Asp 1595 1600 1605
Thr Ile Arg Ile Asn Ala Gly Ala Asp Gln Leu Trp Phe Ala Arg 1610
1615 1620 Gln Gly Asn Asp Leu
Glu Ile Arg Ile Leu Gly Thr Asp Asp Ala 1625 1630
1635 Leu Thr Val His Asp Trp Tyr Arg Asp Ala
Asp His Arg Val Glu 1640 1645 1650
Ala Ile His Ala Ala Asn Gln Ala Ile Asp Pro Ala Gly Ile Glu
1655 1660 1665 Lys Leu
Val Glu Ala Met Ala Gln Tyr Pro Asp Pro Gly Ala Ala 1670
1675 1680 Ala Ala Ala Pro Pro Ala Ala
Arg Val Pro Asp Thr Leu Met Gln 1685 1690
1695 Ser Leu Ala Val Asn Trp Arg 1700
1705 1020DNAArtificial SequenceDescription of Artificial Sequence
Synthetic oligonucleotide 10gggggacgat cgtcgggggg
201120DNAArtificial SequenceDescription of
Artificial Sequence Synthetic oligonucleotide 11tccatgacgt
tcctgacgtt
20128PRTUnknownDescription of Unknown 'SIINFEKL' family peptide
motif 12Ser Ile Ile Asn Phe Glu Lys Leu 1 5
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