Genetic variation in the CCL18-CCL3-CCL4 chemokine gene cluster influences HIV type 1 transmission and AIDS disease progression

Article Abstract:

The genomic DNAs from participants enrolled in five United States-based natural-history cohorts with acquired immunodeficiency syndrome (AIDS) are genotyped for 21 single nucleotide polymorphisms (SNPs) in a 47-kb interval on chromosome 17q12 containing the genes CCL3, CCL4, and CCL18. The findings reiterate the importance of chemokine gene variation in HIV-1/AIDS pathogenesis and emphasize that localized linkage disequilibrium makes the identification of casual mutations difficult.

author: Goedert, James J., Phair, John, Ping An, Buchbinder, Susan, Donfield, Sharyne, Winkler, Cheryl, Modi, William, S., Lautenbrger, James, Scott, Kevin, Kirk, Gregory D., OEBrien, Stephen
California, Diagnosis, Prevention, Development and progression, HIV infection, HIV infections, Disease transmission, Chemokines

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Gene-expression variation within and among human populations

Article Abstract:

The patterns of natural gene-expression variation are characterized in people of European and African ancestry. The results have specified insights into how human population structure manifests itself in gene-expression levels and will help guide the search for regulatory quantitative trait loci.

author: Storey, John D., Madeoy, Jennifer, Strout, Jeanna L., Wurfel, Mark, Ronald, James, Akey, Joshua M.
Human population genetics, Quantitative trait loci, Report

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A fast method for computing high-significance disease association in large population-based studies

Article Abstract:

A faster algorithm for accurately calculating low permutation (P) test values in case-control association studies is presented. It shows that this method significantly increases the problem-size range for which accurate, meaningful association results are attainable.

author: Shamir, Ron, Kimmel, Gad
Methods, Analysis, Usage, Genetic research, Permutations, Classification of sciences, Scientific classification

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subjects list: Research, Genetic variation, Clinical report
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